View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_6 (Length: 566)
Name: NF9653_low_6
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 3950021 - 3950422
Alignment:
| Q |
21 |
agagtcacaaatacaacataaaactcacacccataactccgaggtcttgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950021 |
agagtcacaaatacaacataaaactcacacccataactccgaggtctcgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
3950120 |
T |
|
| Q |
121 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950121 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
3950220 |
T |
|
| Q |
221 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtatttttgcagtgacaacaatgattttgaat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3950221 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtagttttgcagtgacaacaatgattttgaat |
3950320 |
T |
|
| Q |
321 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950321 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
3950420 |
T |
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| Q |
421 |
ta |
422 |
Q |
| |
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|| |
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| T |
3950421 |
ta |
3950422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 416 - 551
Target Start/End: Original strand, 3950624 - 3950759
Alignment:
| Q |
416 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950624 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
3950723 |
T |
|
| Q |
516 |
tactgtttggcaagtcaacttttgcccctgctattt |
551 |
Q |
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| T |
3950724 |
tactgtttggcaagtcaacttttgcccctgctattt |
3950759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 4028182 - 4028122
Alignment:
| Q |
491 |
ttcatacagatatttccagcatgtgtactgtttggcaagtcaacttttgcccctgctattt |
551 |
Q |
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| T |
4028182 |
ttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattt |
4028122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 44090615 - 44090562
Alignment:
| Q |
85 |
aaagaggtccaacctatcaatatcggtattgtcagttaagctaaactttacaag |
138 |
Q |
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| T |
44090615 |
aaagatgttcaacctaacaatatcagtattgtcagttgatctaaactttacaag |
44090562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 25026127 - 25026159
Alignment:
| Q |
313 |
ttttgaatgaatttattctgtaaaattgggttt |
345 |
Q |
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| T |
25026127 |
ttttgaatgaattgattctgtaaaattgggttt |
25026159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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