View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_65 (Length: 233)
Name: NF9653_low_65
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 35703430 - 35703229
Alignment:
| Q |
15 |
aattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatgg |
114 |
Q |
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| T |
35703430 |
aattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatgg |
35703331 |
T |
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| Q |
115 |
tcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcact |
214 |
Q |
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| T |
35703330 |
tcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcact |
35703231 |
T |
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| Q |
215 |
ac |
216 |
Q |
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|| |
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| T |
35703230 |
ac |
35703229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 7957149 - 7957002
Alignment:
| Q |
25 |
taaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcag |
124 |
Q |
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||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7957149 |
taaactcaccaaaaactgcgtttaaggatgcaggagatggtgttgacatgaagttaaggccaatgtagaatgccaacattaatacaatggtcaccatcac |
7957050 |
T |
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| Q |
125 |
ataagttggtaccgccaaagcccagtatctgaaaagcataagtagttt |
172 |
Q |
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| T |
7957049 |
ataagttggtactgccaaagcccagtatctgaaaagcataagtagttt |
7957002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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