View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_69 (Length: 232)
Name: NF9653_low_69
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 14017007 - 14016817
Alignment:
| Q |
26 |
ttctaacaattgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataa |
125 |
Q |
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|||||||| ||||||||| || | || |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||| ||||||| |||| |
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| T |
14017007 |
ttctaacagttgacaacgacgaacccagtggaggtcagtggttgtctaatcttaattctttaacccatcttcacatgtcgtcgatatctaatcttaataa |
14016908 |
T |
|
| Q |
126 |
atttaatagttggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
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|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
14016907 |
atctaatagttggttgcaaatggttggtaagttaccaaaactgagagaactaagtttaagagattgtggcctttctgatcattttatccat |
14016817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 13942983 - 13942801
Alignment:
| Q |
34 |
attgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaata |
133 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||| |||||| ||||| |
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| T |
13942983 |
attgacaacgaagatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttcacatgtggtcgatatctaatcttaataaatctaata |
13942884 |
T |
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| Q |
134 |
gttggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
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|||||||| ||||||||| |||| ||||||| || |||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
13942883 |
gttggttgaaaatggttggtaagttaccaaatctaagagaactaagtttaagatattgtgacctttctgatcattttatccat |
13942801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 13891145 - 13891332
Alignment:
| Q |
27 |
tctaacaattgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaa |
126 |
Q |
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|||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||| || |||||||||| |
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| T |
13891145 |
tctaacaattgacaacggagatcacaacggaggtc--tggttatctaatcttacttctttaacccatcttcacatgttgtcaatatctagtcttgataaa |
13891242 |
T |
|
| Q |
127 |
tttaatagttggttgcaaatggttgctaagctaccaaaactgagagaacta-agtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
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| |||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
13891243 |
tccaatagttggttgcaaatggttggtaagctactaaaactgagagaactagagt-taataagttgtggcctttctgatcattttatccat |
13891332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 13861138 - 13861308
Alignment:
| Q |
46 |
gatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaatagttggttgcaaa |
145 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||| |||| ||||||||||||||||||||||||||| ||| |
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| T |
13861138 |
gatcacagtggaggtcagtggttgtctaatcttacttctttaacccatcttcatctgatgtcaatatctaatcttgataaatttaatagttggttaaaaa |
13861237 |
T |
|
| Q |
146 |
tggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
| |
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|||||| |||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
13861238 |
tggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccat |
13861308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 14112383 - 14112213
Alignment:
| Q |
46 |
gatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaatagttggttgcaaa |
145 |
Q |
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||||||| |||||||||||||||||||||||| || ||||||||||||||| | || |||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
14112383 |
gatcacagtggaggtcagtggttgtctaatctaacctctttaacccatcttcatctgatgtcaatatctaatcttgataaatttaatagttggtttcaaa |
14112284 |
T |
|
| Q |
146 |
tggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
14112283 |
tggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccat |
14112213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 13873433 - 13873607
Alignment:
| Q |
33 |
aattgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaat |
132 |
Q |
| |
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||||||||||| |||||||| ||||||| ||||||||| ||||| |||||||||||||||||| | |||||||| |||| ||||||||||| ||||||| |
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| T |
13873433 |
aattgacaacgaggatcacagtggaggtaagtggttgttgaatctaacttctttaacccatcttcagatgttgtcaatatctaatcttgatagatttaat |
13873532 |
T |
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| Q |
133 |
agttggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcat |
207 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||| |||||||||| || ||| ||||| |||||||||||| |
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| T |
13873533 |
agttggttgcaattggttggtaagctaccaaaactgaaagaactaagtttagaaagttgtggtctttctgatcat |
13873607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 14049091 - 14048917
Alignment:
| Q |
35 |
ttgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaatag |
134 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||| |||||||||| ||||||||| |
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| T |
14049091 |
ttgacaacagggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttcacatgtcgtcaatattgaatcttgatagatttaatag |
14048992 |
T |
|
| Q |
135 |
ttggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattt |
209 |
Q |
| |
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|| |||| ||||||||| ||||||||||||| || ||||||||| | ||| | |||| ||||||||||||||| |
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| T |
14048991 |
tttgttggaaatggttggtaagctaccaaaattgggagaactaaatttaacagattgtgacctttctgatcattt |
14048917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 14086589 - 14086404
Alignment:
| Q |
31 |
acaattgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaattta |
130 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||| |||| ||||||||||||||||| |
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| T |
14086589 |
acaattgacaacaaggatcacagtggaggtcagtggttgtctaatctaacttctttaacccatcttcgcctgatgtgaatatctaatcttgataaattta |
14086490 |
T |
|
| Q |
131 |
atagttggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
| |
|
|||||||||| |||||||||| |||| || ||||||| |||||||||||| |||||| |||| ||||||| ||||||| |||||| |
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| T |
14086489 |
atagttggtttcaaatggttggtaagttaacaaaactaagagaactaagtttaagaaattgtgacctttcttatcatttcatccat |
14086404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 13471146 - 13471325
Alignment:
| Q |
37 |
gacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttgaaatgttgtcgatatataatcttgataaatttaatagtt |
136 |
Q |
| |
|
||||||| ||||||| | ||||||||||| |||||||| |||| ||||||||||||||| | |||| |||||||| |||||| ||| ||||||||||| |
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| T |
13471146 |
gacaacgaagatcacagtagaggtcagtggctgtctaattttacctctttaacccatcttcacatgtcgtcgatatcaaatctttatagatttaatagtt |
13471245 |
T |
|
| Q |
137 |
ggttgcaaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||| |
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|
| T |
13471246 |
ggttggaaacagttggtaagctaccaaaactgatagaactaagtttaagaaattgtggcctttctgatcattttgtccat |
13471325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 14026918 - 14026857
Alignment:
| Q |
34 |
attgacaacggggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatct |
95 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14026918 |
attgacaacagggatcacaacggaggtcagtggttgtctaatcttacttctttaacccatct |
14026857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 14026851 - 14026778
Alignment:
| Q |
143 |
aaatggttgctaagctaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccat |
216 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
14026851 |
aaatggttggtaagttaccaaaactgagagaactaagtttacaaaattgtggcctttctgatcattttatccat |
14026778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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