View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_high_3 (Length: 322)
Name: NF9654_high_3
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 25412024 - 25412331
Alignment:
| Q |
17 |
aaaggacattaagactatcagtttattgattttcaatgcaaagaaaaaggttaccaaataatcgtataattgaaacaacattaaaaacatgaaaacggta |
116 |
Q |
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| T |
25412024 |
aaaggacattaagactatcagtttattgattttcaatgcaaagaaaaaggttaccaaataatcgtataattgaaacaacattaaaaacatgaaaacggta |
25412123 |
T |
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| Q |
117 |
tttgcggttggaatccaaagactagaataaataaaaagaaaatacacttttattttattgttattttaataaaatcatcaacacaaaatgatggtttatt |
216 |
Q |
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| T |
25412124 |
tttgtggttggaatccaaagactagaataaataaaaagaaaatacacttttattttattgttattttaataaaatcatcaacacaaaatgatggtttatt |
25412223 |
T |
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| Q |
217 |
ccaagatagtctaaacttttagttacatcatg--tacattgcacttaggttggtacattgtacactgttctactggttcctgtctatattgggtgtaaga |
314 |
Q |
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| T |
25412224 |
ccaagatagtctaaacttttagttacatcatgtatacattgcacttaggttggtacattgtacactgttctactggttcctgtctatattgggtgtaaga |
25412323 |
T |
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| Q |
315 |
tcttgtat |
322 |
Q |
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| T |
25412324 |
tcttgtat |
25412331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 14917178 - 14917007
Alignment:
| Q |
39 |
ttattgattttcaatgcaaagaaaaaggttaccaaataatcgtataattgaaaca---acattaaaaacatgaaaacggta--tttgcggttggaatcca |
133 |
Q |
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| T |
14917178 |
ttattaattttcaatgcaaagaaaaaggttaccaaataattgtataattaaaacacaggcatttaaaacatgaaaacaatacgcttggtgttggaatcca |
14917079 |
T |
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| Q |
134 |
aagactaga------ataaataaaaagaaaatacactt-ttattttattgttattttaataaaatcatcaaca |
199 |
Q |
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| T |
14917078 |
aatattagaaaacccataaat-aaatgaaaatgcatttcttattttattgttattttaataaaatcatcaaca |
14917007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 19488029 - 19487994
Alignment:
| Q |
164 |
ttttattttattgttattttaataaaatcatcaaca |
199 |
Q |
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| T |
19488029 |
ttttattttattgttattttaataaaatcatcaaca |
19487994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 19488293 - 19488235
Alignment:
| Q |
36 |
agtttattgattttcaatgcaaaga-aaaaggttaccaaataatcgtataattgaaaca |
93 |
Q |
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| T |
19488293 |
agtttattggttttcaatgcaaagaaaaaaggttattaaataattgtataattaaaaca |
19488235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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