View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_high_5 (Length: 242)
Name: NF9654_high_5
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45790038 - 45789797
Alignment:
| Q |
1 |
attgtatggtttagacacttgtatcaaaccttaatcctccccaattatnnnnnnnnnnnnnnnnnnnnccttgaagagggaaatctcggaaggtagtgac |
100 |
Q |
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| T |
45790038 |
attgtatggtttagacacttgtatcaaaccttaatcctccccaattataaaaacacaaaacaaaaaaaccttgaagagggaaatctcggaaggtagtgac |
45789939 |
T |
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| Q |
101 |
agtgattccttggacgaaatctctcaattcgtctgtaatgccgaaactctcaaaattgggattgatatcgacatcgttgttgaatgaaggttcagccaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45789938 |
agtgattcctttgacgaaatctctcaattcgtctgtaatgccgaaactctcaaaattgggattgatatcgacatcgttgttgaatgaaggttcaaccaaa |
45789839 |
T |
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| Q |
201 |
tggatggaagcttgtgccacgatccccttggcagtctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45789838 |
tggatggaagcttgtgccacgatccccttggcattctctgct |
45789797 |
T |
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