View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9654_low_1 (Length: 740)

Name: NF9654_low_1
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9654_low_1
NF9654_low_1
[»] chr4 (6 HSPs)
chr4 (295-681)||(26170855-26171240)
chr4 (673-723)||(26171554-26171604)
chr4 (303-357)||(42278249-42278303)
chr4 (303-353)||(20599759-20599809)
chr4 (307-357)||(47874767-47874817)
chr4 (303-352)||(47878358-47878407)
[»] chr3 (16 HSPs)
chr3 (30-296)||(11394042-11394308)
chr3 (30-296)||(46233725-46233993)
chr3 (666-723)||(3671832-3671889)
chr3 (303-354)||(36827327-36827378)
chr3 (303-353)||(55389342-55389392)
chr3 (294-353)||(53957864-53957923)
chr3 (303-357)||(48808572-48808626)
chr3 (296-353)||(36280190-36280247)
chr3 (304-353)||(53958973-53959022)
chr3 (303-352)||(55388259-55388308)
chr3 (303-337)||(3671251-3671285)
chr3 (303-357)||(36279152-36279206)
chr3 (298-352)||(45600833-45600887)
chr3 (296-354)||(47117944-47118002)
chr3 (307-357)||(52318186-52318236)
chr3 (303-344)||(33837363-33837404)
[»] chr2 (10 HSPs)
chr2 (30-296)||(9208594-9208860)
chr2 (666-723)||(21733336-21733393)
chr2 (303-352)||(43380787-43380836)
chr2 (305-353)||(31443098-31443146)
chr2 (307-357)||(14704209-14704259)
chr2 (303-353)||(32765137-32765187)
chr2 (296-353)||(24459327-24459384)
chr2 (303-344)||(33163320-33163361)
chr2 (303-349)||(31442551-31442597)
chr2 (303-357)||(39016252-39016306)
[»] chr1 (15 HSPs)
chr1 (30-296)||(32440413-32440679)
chr1 (382-614)||(6613142-6613372)
chr1 (665-723)||(6613072-6613130)
chr1 (304-353)||(39726540-39726589)
chr1 (307-351)||(34085746-34085790)
chr1 (294-353)||(6613840-6613899)
chr1 (306-357)||(9339849-9339900)
chr1 (306-353)||(26518312-26518359)
chr1 (303-357)||(7944355-7944409)
chr1 (298-355)||(16249858-16249915)
chr1 (296-353)||(52439654-52439711)
chr1 (314-357)||(32665638-32665681)
chr1 (303-354)||(34088321-34088372)
chr1 (307-352)||(6612634-6612679)
chr1 (296-353)||(51453592-51453649)
[»] chr7 (19 HSPs)
chr7 (62-296)||(16262478-16262712)
chr7 (599-722)||(42448314-42448433)
chr7 (303-357)||(45583794-45583848)
chr7 (303-353)||(7258475-7258525)
chr7 (303-357)||(7259554-7259608)
chr7 (307-357)||(30924878-30924928)
chr7 (303-353)||(44333337-44333387)
chr7 (307-357)||(44334319-44334369)
chr7 (296-353)||(24935566-24935622)
chr7 (436-485)||(42447675-42447724)
chr7 (298-354)||(6680385-6680441)
chr7 (296-352)||(12223553-12223609)
chr7 (303-353)||(12221501-12221551)
chr7 (303-357)||(35728955-35729009)
chr7 (303-353)||(45584370-45584419)
chr7 (307-352)||(10898947-10898992)
chr7 (304-357)||(39708330-39708383)
chr7 (296-353)||(43461590-43461647)
chr7 (303-352)||(48788546-48788595)
[»] chr8 (8 HSPs)
chr8 (296-353)||(28619405-28619462)
chr8 (296-352)||(41122616-41122672)
chr8 (303-357)||(1952839-1952893)
chr8 (306-353)||(10406409-10406456)
chr8 (293-352)||(35177584-35177643)
chr8 (303-353)||(32898318-32898368)
chr8 (304-353)||(35178678-35178727)
chr8 (307-344)||(41121329-41121366)
[»] chr5 (15 HSPs)
chr5 (296-353)||(14891020-14891077)
chr5 (303-353)||(2464869-2464919)
chr5 (296-354)||(9537235-9537293)
chr5 (303-353)||(40611460-40611510)
chr5 (54-123)||(21592442-21592511)
chr5 (54-123)||(21596559-21596628)
chr5 (305-353)||(544850-544898)
chr5 (293-353)||(32641600-32641660)
chr5 (307-354)||(4593973-4594020)
chr5 (306-353)||(25590633-25590680)
chr5 (306-353)||(34173483-34173530)
chr5 (303-353)||(578625-578675)
chr5 (303-353)||(2314387-2314437)
chr5 (303-349)||(8075710-8075756)
chr5 (302-344)||(19271660-19271702)
[»] chr6 (3 HSPs)
chr6 (598-695)||(26064369-26064459)
chr6 (598-695)||(26084338-26084428)
chr6 (600-662)||(25516101-25516164)
[»] scaffold0767 (1 HSPs)
scaffold0767 (303-353)||(6106-6156)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 295 - 681
Target Start/End: Original strand, 26170855 - 26171240
Alignment:
Q  295 tactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaagaaaattatgattggtcgtaatcaaccaaaatttcca 394  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |    
T  26170855 tactttgatccctgaaccgaaaatcaatattcccaaattgaatttgaaatccctaaatcttaagaaaattatgattggtagtaatcaaccaaaatttcta 26170954  T
Q  395 tgcagtacttgctggactacttcagtaggtattttctacgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatggttttgtgcatgct 494  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26170955 tgcagtacttgctggactacttcagtaggtattttctatgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatggttttgtgcatgct 26171054  T
Q  495 ttttatatggtcataatacattgtaattattagtgtgttttgattatatgcaatagagagagattttcataacgaattgaggggaataaccttaatgata 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26171055 ttttatatggtcataatacattgtaattattagtgtgttttgattatatgcaatagagagagattttcataacgaattga-gggaataaccttaatgata 26171153  T
Q  595 taaagaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcacttta 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26171154 taaagaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcacttta 26171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 673 - 723
Target Start/End: Original strand, 26171554 - 26171604
Alignment:
Q  673 ttcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacc 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26171554 ttcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacc 26171604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 42278249 - 42278303
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  42278249 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 42278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 20599809 - 20599759
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| ||||| |||||  ||||||||||| |||||||||||||||    
T  20599809 tccctgaaccaaaaattaatattcccaaattgaatctcaaattcctaaatc 20599759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 47874767 - 47874817
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| |||||||||||| | ||||||||| |||||| ||||||||||||    
T  47874767 tgaaccaaaaatcaatatcccaaaattgaatatcaaatccctaaatcttaa 47874817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 47878407 - 47878358
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||||||| |||||||||||  | ||||||||| ||||||||||||||    
T  47878407 tccctgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaat 47878358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 11394308 - 11394042
Alignment:
Q  30 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11394308 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 11394209  T
Q  130 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394208 tatgcattacattggtaaccaaaacattggaattaacaatgcaaacattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 11394109  T
Q  230 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394108 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 11394042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 46233725 - 46233993
Alignment:
Q  30 gagctgaaaggcttgagtgaga--atttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 127  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233725 gagctgaaaggcttgagtgagagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 46233824  T
Q  128 gatatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaat 227  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46233825 tatatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaat 46233924  T
Q  228 ccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233925 ccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 46233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 666 - 723
Target Start/End: Original strand, 3671832 - 3671889
Alignment:
Q  666 tactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacc 723  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  3671832 tactatattcactttatgcagtaatatctttcaacaccaagttgtcatgccaagaacc 3671889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 36827378 - 36827327
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  36827378 tccctgaatcgaaaatcaatatccccaaattgaatttcaaattcctaaatct 36827327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 55389392 - 55389342
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  55389392 tccctgaaccgaaaatcaatattcccaaattgaatatcaaattcctaaatc 55389342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 53957864 - 53957923
Alignment:
Q  294 ttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||| ||| |||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  53957864 ttactttagtccatgaaccaaaaatcaatatccccaaattgaatgtcaaatccctaaatc 53957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 48808572 - 48808626
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||  ||||||||||| |||||| ||||||||||||    
T  48808572 tccctgaaccaaaaatcaatattcccaaattgaatatcaaatccctaaatcttaa 48808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 36280247 - 36280190
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||| ||||| |||| |||||||||||  ||||||||||| |||||||||||||||    
T  36280247 actttagtccctaaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 36280190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 53959022 - 53958973
Alignment:
Q  304 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  53959022 ccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 53958973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 55388259 - 55388308
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||||||| |||||||||||| ||||||||||| |||||| |||||||    
T  55388259 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaat 55388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 3671251 - 3671285
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaat 337  Q
    ||||||||||||||||||||||| |||||||||||    
T  3671251 tccctgaaccgaaaatcaatatccccaaattgaat 3671285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 36279152 - 36279206
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| ||||  |||||| ||||||||||| |||||| ||||||||||||    
T  36279152 tccctgaaccaaaaaaaaatatccccaaattgaatatcaaatccctaaatcttaa 36279206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 45600887 - 45600833
Alignment:
Q  298 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||| ||| |||||| |||||||||||| |||| ||||||||||||| |||||||    
T  45600887 tttagtccttgaaccaaaaatcaatatccccaacttgaatttcaaatccctaaat 45600833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 47118002 - 47117944
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    |||||| |||||||||| |||||||||||| |||| |||||| || ||| |||||||||    
T  47118002 actttagtccctgaaccaaaaatcaatatccccaacttgaatctcgaatccctaaatct 47117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 52318236 - 52318186
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| |||| ||||||| ||||||||||| |||||| ||||||||||||    
T  52318236 tgaaccaaaaaacaatatccccaaattgaatatcaaatccctaaatcttaa 52318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 33837363 - 33837404
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 344  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  33837363 tccctgaaccaaaaatcaatatccccagattgaatttcaaat 33837404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 9208860 - 9208594
Alignment:
Q  30 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 129  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9208860 gagctaaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 9208761  T
Q  130 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9208760 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaatcc 9208661  T
Q  230 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9208660 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 9208594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 21733393 - 21733336
Alignment:
Q  666 tactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacc 723  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21733393 tactatattcactttatgcagtaatctttttcaacaccaagttatcatgccatgaacc 21733336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 43380787 - 43380836
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  43380787 tccctgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaat 43380836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 31443146 - 31443098
Alignment:
Q  305 cctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  31443146 cctgaaccgaaaatcaatatctccaaattaaatctcaaattcctaaatc 31443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 14704209 - 14704259
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  14704209 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 14704259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 32765137 - 32765187
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  32765137 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 32765187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 24459384 - 24459327
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||| ||||||||||| |||||||||||  ||||||||||| |||||||| ||||||    
T  24459384 actttgatccctgaaccaaaaatcaatattcccaaattgaatatcaaattcgtaaatc 24459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 33163361 - 33163320
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 344  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  33163361 tccctgaaccaaaaatcaatatccccaaattgaatttcaaat 33163320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 31442551 - 31442597
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattccta 349  Q
    ||||||||||||||||||||||| | ||||||||| |||||| ||||    
T  31442551 tccctgaaccgaaaatcaatatccctaaattgaatctcaaatcccta 31442597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 39016306 - 39016252
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||  ||||||||||| | |||| ||||||||||||    
T  39016306 tccctgaaccaaaaatcaatatgcccaaattgaatatgaaatccctaaatcttaa 39016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32440413 - 32440679
Alignment:
Q  30 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 129  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  32440413 gagctgaaaggcttgggtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggtcggagaggttgttgttttacta 32440512  T
Q  130 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32440513 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattgaaactatgcacacgtttcacaaagtttgatataaagggctggatcaatcc 32440612  T
Q  230 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32440613 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 32440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 382 - 614
Target Start/End: Complemental strand, 6613372 - 6613142
Alignment:
Q  382 accaaaatttccatgcagtacttgctggactacttcagtaggtattttctacgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatgg 481  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||    
T  6613372 accaaaatttctatgtagtacttgctggactacttcggtaggtattttctatgtagtggttgggcaatcaaggcttggaacaatttattacttggtatgg 6613273  T
Q  482 ttttgtgcatgctttttatatggtcataatacattgtaattattagtgtg-ttttgattatatgcaatagagagagattttcataacgaattgaggggaa 580  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||  |||||||||||||||||||||||||| ||  |    
T  6613272 ttttgtgcatgctttttatatggtcatattacattgtaattattagggtgtttttggttatatgca--agagagagattttcataacgaattga-ggata 6613176  T
Q  581 taaccttaatgatataaagaaagtcaaaattgca 614  Q
    ||||||| ||||||||||||||||||||||||||    
T  6613175 taaccttgatgatataaagaaagtcaaaattgca 6613142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 6613130 - 6613072
Alignment:
Q  665 ctactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacc 723  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  6613130 ctactatattcactttatgcagtgatctctttcaacaccaagttgtcgtgccatgaacc 6613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 39726589 - 39726540
Alignment:
Q  304 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  39726589 ccctgaaccaaaaatcaatatcaccaaattgaattccaaatccctaaatc 39726540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 34085746 - 34085790
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaa 351  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  34085746 tgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaa 34085790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 6613899 - 6613840
Alignment:
Q  294 ttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||  |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  6613899 ttactttgttccctgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaatc 6613840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 9339849 - 9339900
Alignment:
Q  306 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  9339849 ctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 9339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 26518312 - 26518359
Alignment:
Q  306 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  26518312 ctgaaccgaaaaccaatatctccaaattgaatctcaaattcctaaatc 26518359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 7944355 - 7944409
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| ||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  7944355 tccctggaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 7944409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 16249858 - 16249915
Alignment:
Q  298 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatctt 355  Q
    |||| ||||||||||||||||||||||| | ||||||||| | |||| ||||||||||    
T  16249858 tttagtccctgaaccgaaaatcaatatccctaaattgaatcttaaatccctaaatctt 16249915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 52439654 - 52439711
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||| |||||| |||| ||||||||||||  |||||||||| |||||||||||||||    
T  52439654 actttgatccctaaaccaaaaatcaatatcctcaaattgaatatcaaattcctaaatc 52439711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 32665681 - 32665638
Alignment:
Q  314 aaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  32665681 aaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 32665638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 34088372 - 34088321
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    |||||||||  ||| |||||||| |||||||||||||||||| |||||||||    
T  34088372 tccctgaacaaaaattcaatatccccaaattgaatttcaaatccctaaatct 34088321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 6612634 - 6612679
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  6612634 tgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaat 6612679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 51453649 - 51453592
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||| ||||||||| |  |||||||||||  ||||||||||||||||| ||||||||    
T  51453649 actttgatccctgaatcataaatcaatatccgcaaattgaatttcaaatccctaaatc 51453592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 16262478 - 16262712
Alignment:
Q  62 gaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaa 161  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  16262478 gaggaaaagagagggaggagagaaagcaacaatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaa 16262577  T
Q  162 ttaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaacttt 261  Q
    ||||||||||||| |||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16262578 ttaacaatgcaaacattgaaacaatgcacgcgtttcacaaagtttgatataaacggctggatcaatccaagggccataattagttggcgcctaaaacttt 16262677  T
Q  262 aggattagggttttggagtgataattggagtgtta 296  Q
    ||||||||||||||||||||||||||| |||||||    
T  16262678 aggattagggttttggagtgataattgaagtgtta 16262712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 599 - 722
Target Start/End: Original strand, 42448314 - 42448433
Alignment:
Q  599 gaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctttca 698  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||  | ||||| |||||||||||    
T  42448314 gaaagtcaaaattgcaccaatttgatataaagagataaaaacacat--ttagaaccacaagctctgctactatattcac--tctgcagcaatctctttca 42448409  T
Q  699 acaccaagttatcatgccatgaac 722  Q
    |||||||||| |||||||||||||    
T  42448410 acaccaagttgtcatgccatgaac 42448433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 45583794 - 45583848
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  45583794 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 45583848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 7258475 - 7258525
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  7258475 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 7258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 7259608 - 7259554
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| ||||| |||||| ||||||||||| |||||| ||||||||||||    
T  7259608 tccctgaaccaaaaattaatatccccaaattgaatatcaaatccctaaatcttaa 7259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 30924928 - 30924878
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  30924928 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 30924878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 44333337 - 44333387
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  44333337 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 44333387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 44334369 - 44334319
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  44334369 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 44334319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 24935622 - 24935566
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||| ||||||||||  ||||||| |||||||||||||||| |||||||||||||||    
T  24935622 actttgatccctgaactaaaaatca-tatcaccaaattgaatctcaaattcctaaatc 24935566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 42447675 - 42447724
Alignment:
Q  436 agtggttgggcaatcaaggcttggaacaacatgttacttggtatggtttt 485  Q
    |||||||||||||||||||||||||| | | ||||||||||| |||||||    
T  42447675 agtggttgggcaatcaaggcttggaatagcctgttacttggtctggtttt 42447724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 6680441 - 6680385
Alignment:
Q  298 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    |||| ||||| |||| |||||||||||| ||||||||||||| |||||| |||||||    
T  6680441 tttagtccctaaaccaaaaatcaatatccccaaattgaattttaaattcataaatct 6680385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 12223609 - 12223553
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    ||||| |||| |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  12223609 actttgatccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaat 12223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 12221501 - 12221551
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| || ||||||||| ||||||||||| ||||||| |||||||    
T  12221501 tccctgaaccaaagatcaatatccccaaattgaatatcaaatttctaaatc 12221551  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 35729009 - 35728955
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||  ||||||||||| | |||| ||||||||||||    
T  35729009 tccctgaaccaaaaatcaatattcccaaattgaatattaaatccctaaatcttaa 35728955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 45584419 - 45584370
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  45584419 tccctgaacc-aaaatcaatattcccaaattgaatatcaaattcctaaatc 45584370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 10898992 - 10898947
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||    
T  10898992 tgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaat 10898947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 39708330 - 39708383
Alignment:
Q  304 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||| |||| |||||||||||   ||||||||||||||||| ||||||||||||    
T  39708330 ccctaaaccaaaaatcaatattctcaaattgaatttcaaatccctaaatcttaa 39708383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 43461647 - 43461590
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||| ||||||||||| |||||||||||| |  |||||||| |||||| ||||||||    
T  43461647 actttgatccctgaaccaaaaatcaatatccctcaattgaatctcaaatccctaaatc 43461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 48788595 - 48788546
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    |||||||||| |||||||||||   |||||||||| ||||||||||||||    
T  48788595 tccctgaaccaaaaatcaatattcacaaattgaatatcaaattcctaaat 48788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 28619462 - 28619405
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||    
T  28619462 actttaatccatgaaccaaaaatcaatatccccaaattgaatttcaaatccctaaatc 28619405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 41122672 - 41122616
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    ||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  41122672 actttgatccctgaaccaaaaatcaatatctccaaattgaatctcaaattcctaaat 41122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 1952893 - 1952839
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 357  Q
    |||||||||| |||||||||||  ||||||||||| |||||| ||||||||||||    
T  1952893 tccctgaaccaaaaatcaatatgcccaaattgaatatcaaatccctaaatcttaa 1952839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 10406409 - 10406456
Alignment:
Q  306 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  10406409 ctgaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatc 10406456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 35177584 - 35177643
Alignment:
Q  293 gttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 352  Q
    ||||||||  |||||||||| ||||||| |||| ||||||||||| |||||| |||||||    
T  35177584 gttactttggtccctgaaccaaaaatcagtatccccaaattgaatatcaaatccctaaat 35177643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 32898368 - 32898318
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| ||||||||||||  |||||||||| |||||| ||||||||    
T  32898368 tccctgaaccaaaaatcaatatcctcaaattgaatatcaaatccctaaatc 32898318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 35178727 - 35178678
Alignment:
Q  304 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||| |||||||||||  ||||||||||| |||||||| ||||||    
T  35178727 ccctgaaccaaaaatcaatattcccaaattgaatatcaaattcttaaatc 35178678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 41121329 - 41121366
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaat 344  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  41121329 tgaaccaaaaatcaatatccccaaattgaatttcaaat 41121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 14891077 - 14891020
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||| |||||||| | |||||||||||  |||||||||||||||||||||||||||    
T  14891077 actttagtccctgaatcaaaaatcaatattcccaaattgaatttcaaattcctaaatc 14891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 2464869 - 2464919
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  2464869 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 2464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 9537235 - 9537293
Alignment:
Q  296 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    ||||| ||||||||| | |||||||||||| ||||||||||| |||||| |||||||||    
T  9537235 actttgatccctgaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatct 9537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 40611460 - 40611510
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  40611460 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 40611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 21592511 - 21592442
Alignment:
Q  54 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 123  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21592511 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21592442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 21596628 - 21596559
Alignment:
Q  54 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 123  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21596628 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21596559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 544850 - 544898
Alignment:
Q  305 cctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  544850 cctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 544898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 32641660 - 32641600
Alignment:
Q  293 gttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||| |||||| |||| |||||||||||| ||||||||||| | |||| ||||||||    
T  32641660 gttactttgatccctcaaccaaaaatcaatatccccaaattgaatatgaaatccctaaatc 32641600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 4594020 - 4593973
Alignment:
Q  307 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 354  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  4594020 tgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatct 4593973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 25590633 - 25590680
Alignment:
Q  306 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  25590633 ctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 25590680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 34173483 - 34173530
Alignment:
Q  306 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||| |||||||||||| ||||||||||||||||||  |||||||    
T  34173483 ctgaaccaaaaatcaatatccccaaattgaatttcaaatcactaaatc 34173530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 578675 - 578625
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    ||||||||||||||||||||||| | ||||||||| ||| ||| |||||||    
T  578675 tccctgaaccgaaaatcaatatccctaaattgaatctcagatttctaaatc 578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 2314437 - 2314387
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| ||| | |||||| ||||||||||| |||||||||||||||    
T  2314437 tccctgaaccaaaatttaatatccccaaattgaatatcaaattcctaaatc 2314387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 8075756 - 8075710
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattccta 349  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||    
T  8075756 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattccta 8075710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 19271702 - 19271660
Alignment:
Q  302 atccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 344  Q
    |||||| ||||||||||||||||| |||| |||||||||||||    
T  19271702 atccctaaaccgaaaatcaatatctccaagttgaatttcaaat 19271660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 695
Target Start/End: Complemental strand, 26064459 - 26064369
Alignment:
Q  598 agaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctt 695  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||||     |||||||||||||| |||| ||| |||||    
T  26064459 agaaagtaaaaattgcaccaatttgatataaagaggtaaa---acacaattagaaccacaaact----aactatattcactttctgcattaacctctt 26064369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 695
Target Start/End: Complemental strand, 26084428 - 26084338
Alignment:
Q  598 agaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctt 695  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||||     |||||||||||||| |||| ||| |||||    
T  26084428 agaaagtaaaaattgcaccaatttgatataaagaggtaaa---acacaattagaaccacaaact----aactatattcactttctgcattaacctctt 26084338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 662
Target Start/End: Complemental strand, 25516164 - 25516101
Alignment:
Q  600 aaagtcaaaattgcagcaatttgatataaagagat-aaaaacacataattagaaccacaaactc 662  Q
    ||||| ||||||||| ||||||||||||||| ||| ||||| ||| | ||||||||||||||||    
T  25516164 aaagtaaaaattgcaccaatttgatataaagcgataaaaaaaacacatttagaaccacaaactc 25516101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 6156 - 6106
Alignment:
Q  303 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 353  Q
    |||||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  6156 tccctgaaccaaaaatcaatatccccaaatataatctcaaattcctaaatc 6106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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