View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_low_10 (Length: 293)
Name: NF9654_low_10
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 53041083 - 53040816
Alignment:
| Q |
18 |
aagaattgccctgaaaggaagccaccggtcatataatctcaatcatgaaaactaagctttgaatagtctatagccgtcaatgatatttgcttcaattatc |
117 |
Q |
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| T |
53041083 |
aagaattgccctgaaaggaagccaccagtcatataatctcaatcatgaaaactaagctttgaatagtctatagtcgtcaatgatatttgcttcaattatc |
53040984 |
T |
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| Q |
118 |
tttttccatgcaggaaaatttggctaatgagcaaacataatttgtaaagaataaaaatcaatttataggatgatacagagggtgaacattattaattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53040983 |
tttttccatgcaggaaaatttggctaatgagcaaacataatttgtaaagaataaaaatcaatttataggatgatacagagggtgaacattattaattgat |
53040884 |
T |
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| Q |
218 |
ccttcagcatacaaaaattgatagtaaaagatagaattgtaagcccagccatttatgttttctctgct |
285 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53040883 |
ccttcagcatacaaaaattgataataaaagatagaattgtaagcccagccatttatgttttctctgct |
53040816 |
T |
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