View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_low_11 (Length: 256)
Name: NF9654_low_11
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 27972810 - 27972584
Alignment:
| Q |
19 |
ataacattatgaaaattgatttaaaataaaatttaaatttgtccatttgatcttcactatatgaccgatatcaaatttgttggtaacgccaattgcagga |
118 |
Q |
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| T |
27972810 |
ataacattatgaaaattgatttaaaataaaatttaaatttgtccatttgatcttcactatatgaccgatatcaaatttgttggtaacgccaattgcagga |
27972711 |
T |
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| Q |
119 |
aatccacttccatgtaatttgcagt---aagatgcc-tattataaatatgacagagagatnnnnnnnnngtaaaatgctaatataagttaacatattttg |
214 |
Q |
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| T |
27972710 |
aatccacttccatgtaatttgcagtaagaagatgccttattataaatatgacagagagat-aaaaaaaagtaaaatgctaatataagttaacatattttg |
27972612 |
T |
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| Q |
215 |
cagtaaattaatcggagctaagtattat |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27972611 |
cagtaaattaatcggagctaagtattat |
27972584 |
T |
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