View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_low_13 (Length: 243)
Name: NF9654_low_13
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 41623945 - 41623736
Alignment:
| Q |
15 |
cacagaacaaaatacataagtaattaatacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca |
114 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623945 |
cacacaacaaaatacataagtaattattacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca |
41623846 |
T |
|
| Q |
115 |
actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623845 |
actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc |
41623746 |
T |
|
| Q |
215 |
tggtggataa |
224 |
Q |
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|||||||||| |
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| T |
41623745 |
tggtggataa |
41623736 |
T |
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