View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9654_low_16 (Length: 241)

Name: NF9654_low_16
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9654_low_16
NF9654_low_16
[»] chr8 (8 HSPs)
chr8 (25-230)||(12199790-12199995)
chr8 (25-230)||(12444218-12444423)
chr8 (78-224)||(12194837-12194983)
chr8 (78-224)||(12439265-12439411)
chr8 (132-229)||(15348452-15348549)
chr8 (25-62)||(12194771-12194808)
chr8 (25-62)||(12439199-12439236)
chr8 (147-175)||(41311566-41311594)
[»] chr4 (31 HSPs)
chr4 (118-230)||(7770980-7771092)
chr4 (114-230)||(7904604-7904720)
chr4 (118-224)||(7238116-7238222)
chr4 (123-230)||(45372447-45372554)
chr4 (146-222)||(7789693-7789769)
chr4 (149-228)||(7907932-7908011)
chr4 (144-223)||(48170986-48171065)
chr4 (152-223)||(49044626-49044697)
chr4 (144-222)||(48735713-48735791)
chr4 (156-224)||(7813094-7813162)
chr4 (156-224)||(7822583-7822651)
chr4 (121-224)||(7774225-7774328)
chr4 (132-223)||(48862831-48862922)
chr4 (158-223)||(49048996-49049061)
chr4 (156-224)||(7800251-7800319)
chr4 (121-224)||(7877299-7877402)
chr4 (126-223)||(45366618-45366715)
chr4 (133-222)||(48156825-48156914)
chr4 (132-224)||(48902540-48902632)
chr4 (156-224)||(49041534-49041602)
chr4 (140-230)||(7765219-7765309)
chr4 (144-222)||(48870144-48870222)
chr4 (144-222)||(48885830-48885908)
chr4 (158-223)||(48148082-48148147)
chr4 (126-223)||(48898306-48898403)
chr4 (156-230)||(7786057-7786131)
chr4 (156-222)||(48891023-48891089)
chr4 (134-222)||(50668635-50668723)
chr4 (164-223)||(33134223-33134282)
chr4 (123-216)||(45385191-45385284)
chr4 (155-219)||(37827395-37827459)
[»] chr3 (4 HSPs)
chr3 (132-230)||(11006352-11006450)
chr3 (132-224)||(11024933-11025025)
chr3 (156-230)||(47452297-47452371)
chr3 (132-224)||(11015921-11016013)
[»] chr1 (5 HSPs)
chr1 (147-222)||(24322067-24322142)
chr1 (158-224)||(24340030-24340096)
chr1 (183-222)||(24366796-24366835)
chr1 (164-224)||(24309799-24309859)
chr1 (132-219)||(24415427-24415514)
[»] chr5 (6 HSPs)
chr5 (137-223)||(29712866-29712952)
chr5 (133-216)||(29687642-29687725)
chr5 (126-219)||(29695736-29695829)
chr5 (164-223)||(42562728-42562787)
chr5 (156-222)||(1812039-1812105)
chr5 (133-222)||(178610-178699)
[»] chr7 (1 HSPs)
chr7 (133-222)||(48883373-48883465)
[»] chr6 (3 HSPs)
chr6 (161-221)||(14193144-14193204)
chr6 (156-223)||(21015390-21015457)
chr6 (147-223)||(21980041-21980117)
[»] scaffold0508 (1 HSPs)
scaffold0508 (170-224)||(11890-11944)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 12199790 - 12199995
Alignment:
Q  25 atttcatcacctgaaatcccctagggttacgcgcaacagagtcaagaacatggcagagaagaaacacaatcgcatggtgaagatgaaagagacgttgtat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12199790 atttcatcacctgaaatcccctagggttacgcgcaacagagtcaagaacatggcagagaagaaatacaatcgcatggtgaagatgaaagagacgttgtat 12199889  T
Q  125 attccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199890 attccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 12199989  T
Q  225 ctcctc 230  Q
     |||||    
T  12199990 atcctc 12199995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 12444218 - 12444423
Alignment:
Q  25 atttcatcacctgaaatcccctagggttacgcgcaacagagtcaagaacatggcagagaagaaacacaatcgcatggtgaagatgaaagagacgttgtat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12444218 atttcatcacctgaaatcccctagggttacgcgcaacagagtcaagaacatggcagagaagaaatacaatcgcatggtgaagatgaaagagacgttgtat 12444317  T
Q  125 attccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444318 attccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 12444417  T
Q  225 ctcctc 230  Q
     |||||    
T  12444418 atcctc 12444423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 12194837 - 12194983
Alignment:
Q  78 cagagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 177  Q
    ||||||||||  ||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12194837 cagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 12194936  T
Q  178 tttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||    
T  12194937 tttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 12439265 - 12439411
Alignment:
Q  78 cagagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 177  Q
    ||||||||||  ||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12439265 cagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 12439364  T
Q  178 tttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||    
T  12439365 tttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 15348452 - 15348549
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcct 229  Q
    ||||||||||  ||||||| ||   |||||| ||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  15348452 atgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 12194771 - 12194808
Alignment:
Q  25 atttcatcacctgaaatcccctagggttacgcgcaaca 62  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12194771 atttcatcacttggaatcccctagggttacgcgcaaca 12194808  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 12439199 - 12439236
Alignment:
Q  25 atttcatcacctgaaatcccctagggttacgcgcaaca 62  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12439199 atttcatcacttggaatcccctagggttacgcgcaaca 12439236  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 41311594 - 41311566
Alignment:
Q  147 aaatcctgctgaggttgccggtgaagtct 175  Q
    |||||||||||||||||||||||||||||    
T  41311594 aaatcctgctgaggttgccggtgaagtct 41311566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 7770980 - 7771092
Alignment:
Q  118 gttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctctt 217  Q
    ||||||| | ||| ||||| |||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  7770980 gttgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctctt 7771079  T
Q  218 atctctgctcctc 230  Q
    ||||||| |||||    
T  7771080 atctctgatcctc 7771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 7904604 - 7904720
Alignment:
Q  114 agacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttc 213  Q
    ||||||||||| |||||  |||||| || ||||||||| || || ||||||| |||||||||||| || ||||||||||||||||||||| |||||||||    
T  7904604 agacgttgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttc 7904703  T
Q  214 tcttatctctgctcctc 230  Q
    ||||||||||| |||||    
T  7904704 tcttatctctgatcctc 7904720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 7238222 - 7238116
Alignment:
Q  118 gttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctctt 217  Q
    ||||||| | ||| ||||| ||||||| ||||| ||| |||||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  7238222 gttgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctctt 7238123  T
Q  218 atctctg 224  Q
    |||||||    
T  7238122 atctctg 7238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 45372554 - 45372447
Alignment:
Q  123 atattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    |||| ||| ||||||| || |||||||| || || ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||    
T  45372554 atatgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctc 45372455  T
Q  223 tgctcctc 230  Q
    || |||||    
T  45372454 tgatcctc 45372447  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 7789693 - 7789769
Alignment:
Q  146 caaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||    
T  7789693 caaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 7907932 - 7908011
Alignment:
Q  149 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcc 228  Q
    ||||| ||||||||||||||||||||||||  | ||||||| | |||| |||||||||||||||||||||||||||||||    
T  7907932 atcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctcc 7908011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 48171065 - 48170986
Alignment:
Q  144 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||||| |||||||||||  |||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct 48170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 49044697 - 49044626
Alignment:
Q  152 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    |||||||||||||| |||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  49044697 ctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 48735791 - 48735713
Alignment:
Q  144 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||| || |||||||| ||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7813094 - 7813162
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||||||||||||    
T  7813094 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7822583 - 7822651
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||||||||||||    
T  7822583 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7822651  T

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Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 7774328 - 7774225
Alignment:
Q  121 gtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatc 220  Q
    |||| ||||| ||||||| || ||||||||| || || || ||||||||||||||||| |   |||||||||||||||||||  ||||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  221 tctg 224  Q
    ||||    
T  7774228 tctg 7774225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 48862831 - 48862922
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||||| ||||| | ||||||||| ||||| ||||||||||||||| |  |||||||||| ||||| ||||| ||||||||||||||||||    
T  48862831 atgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

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Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  158 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7800251 - 7800319
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||||| ||||||    
T  7800251 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctg 7800319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 7877299 - 7877402
Alignment:
Q  121 gtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatc 220  Q
    |||| ||||| ||||||| || || ||||||||| |  |||||| ||||||||||||| || ||||||||||  ||||||||  ||||||||||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  221 tctg 224  Q
    ||||    
T  7877399 tctg 7877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 45366715 - 45366618
Alignment:
Q  126 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||| ||||||| || || |||||||| || ||||| || |||||||||||| || ||||||| || ||||||||||  ||||||||||||||||||    
T  45366715 ttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctct 45366618  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 48156914 - 48156825
Alignment:
Q  133 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    |||||| || |||||||||||  |  |||| ||||||||||||||| || ||||||| || ||||||||||| |||||||||||||||||    
T  48156914 tgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 48902540 - 48902632
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||||| ||||| |||||  ||| | |||||||||| ||||||||  |  |||||||||||||||||||||| |||||||||||||| ||||    
T  48902540 atgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatctg 48902632  T

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Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 49041602 - 49041534
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    |||| ||||| |||||||||||| | ||||||||||| ||||| ||||| |||||||||||||||||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctg 49041534  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 7765219 - 7765309
Alignment:
Q  140 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcctc 230  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| ||||||||| |||||    
T  7765219 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctc 7765309  T

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Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 48870144 - 48870222
Alignment:
Q  144 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||| ||||||||| | |||||||| |||||| |  |||||||||| ||||||||||| ||||||| |||||||||    
T  48870144 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

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Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 48885830 - 48885908
Alignment:
Q  144 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||| ||||||||| | |||||||| |||||| |  |||||||||| ||||||||||| ||||||| |||||||||    
T  48885830 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 48148147 - 48148082
Alignment:
Q  158 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||| || |||||||||||| |  ||||||||||||| |||||||| ||||||||||||||||||    
T  48148147 aggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 48898306 - 48898403
Alignment:
Q  126 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||| |||||||  |||||||||| ||||||||  | || ||||||||||||  | ||||||| |||||||||||||| ||||| || |||||||||    
T  48898306 ttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctct 48898403  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 7786057 - 7786131
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcctc 230  Q
    |||||||||||||||| |||||| |||  |||||||| |||||||||  |||| ||||| ||||||||| |||||    
T  7786057 tgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctc 7786131  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 48891023 - 48891089
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    |||||||  |||| ||||||||| || |||||||||| ||||||||||| |||||||||||| ||||    
T  48891023 tgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc 48891089  T

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Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 50668635 - 50668723
Alignment:
Q  134 gaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||| |||||||||||  || |||||||||| ||||| | |||| || ||||||| || |||||||| || ||||||||||| |||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 50668723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 33134282 - 33134223
Alignment:
Q  164 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||||||||||||| |  |||||||||| ||||||||| | || |||||||||||||||    
T  33134282 ccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 45385284 - 45385191
Alignment:
Q  123 atattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctct 216  Q
    |||| ||| ||||||| || || |||||||| || ||||| || || ||||||||  || |||||||||  ||||||||||| |||||||||||    
T  45385284 atatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctct 45385191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 37827459 - 37827395
Alignment:
Q  155 ctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 219  Q
    ||||||||| | |||||||||||| || |||| | ||| |||||||||||||||||  |||||||    
T  37827459 ctgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttat 37827395  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 11006450 - 11006352
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcctc 230  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  11006450 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctc 11006352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 11025025 - 11024933
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||||| ||||| |||||| || ||||||| ||||||||||||||  || |||||||||| |||||||||||||||||  ||||||||||||    
T  11025025 atgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 47452371 - 47452297
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgctcctc 230  Q
    ||||||||||||||||||||||| || | ||||| ||  ||| |||||||||||||||||||||||||| |||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctc 47452297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 11016013 - 11015921
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||||| || || |||||| || ||||||| ||||||||||||||  || |||||||||| ||||||||||||| |||  ||||||||||||    
T  11016013 atgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 24322067 - 24322142
Alignment:
Q  147 aaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||| || ||||||| ||||||||||||| |  |||||||||| ||||||||||| |||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 24340030 - 24340096
Alignment:
Q  158 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||| ||||| ||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctg 24340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 24366796 - 24366835
Alignment:
Q  183 gtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  24366796 gtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 24309799 - 24309859
Alignment:
Q  164 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
    ||||| ||||||||| |  |||||||||  |||||||||| ||||||||||||||||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctg 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 24415427 - 24415514
Alignment:
Q  132 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 219  Q
    ||||||| ||||  ||||||||  |||| || ||||| ||||||||| |  |||||||||| ||| ||||||| ||||||||||||||    
T  24415427 atgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 29712952 - 29712866
Alignment:
Q  137 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  29712952 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 29687642 - 29687725
Alignment:
Q  133 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctct 216  Q
    |||||| |||||||||||||| || | ||| || |||||||||||| || | ||||| |||||||||||||| |||||||||||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 29695736 - 29695829
Alignment:
Q  126 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 219  Q
    |||||| ||| |||||||||||||||||  | ||||| || || ||||||||| |  |||||||||| |||||||||| |||||| ||||||||    
T  29695736 ttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttat 29695829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 42562787 - 42562728
Alignment:
Q  164 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    |||||||| |||||| |  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42562787 ccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 1812039 - 1812105
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||| || ||||||| |||  || ||| |||||| |||||||||| ||||||||||||||||||    
T  1812039 tgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 178610 - 178699
Alignment:
Q  133 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    |||||| ||||| |||||||| ||  | || || || ||||||||| |  |||||||||||||||||||||| ||||| ||||| |||||    
T  178610 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 48883373 - 48883465
Alignment:
Q  133 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttc---aaatgtgtttgtaagtcatggttttctcttatctc 222  Q
    ||||||||||||||||||  || ||||||| |  ||||||||||||||| |||||   ||||||||||||||| | |||||||||||| ||||    
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctcttctctc 48883465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 14193204 - 14193144
Alignment:
Q  161 ttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatct 221  Q
    |||| |||||||||||| ||| |||||||||||||||||||||  ||| ||||||||||||    
T  14193204 ttgctggtgaagtctctcttaggtttcaaatgtgtttgtaagttttggctttctcttatct 14193144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 21015390 - 21015457
Alignment:
Q  156 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    ||||||| ||||| | ||||||| || ||||||| ||||||||||||| || ||||||||||||||||    
T  21015390 tgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct 21015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 21980117 - 21980041
Alignment:
Q  147 aaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 223  Q
    |||||||||| ||||  || || |||||||| | | ||||||| |||||||||||||| ||||||||||| ||||||    
T  21980117 aaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctct 21980041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 11890 - 11944
Alignment:
Q  170 aagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 224  Q
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T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctg 11944  T

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