View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9654_low_20 (Length: 214)

Name: NF9654_low_20
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9654_low_20
NF9654_low_20
[»] chr3 (10 HSPs)
chr3 (15-198)||(2836800-2836983)
chr3 (15-198)||(2854010-2854193)
chr3 (19-198)||(2750753-2750932)
chr3 (19-198)||(5414643-5414822)
chr3 (22-160)||(2761010-2761148)
chr3 (22-163)||(2820353-2820494)
chr3 (23-103)||(2809120-2809200)
chr3 (35-198)||(2770818-2770981)
chr3 (38-194)||(2799123-2799279)
chr3 (35-163)||(2792107-2792235)
[»] chr1 (1 HSPs)
chr1 (15-171)||(11115961-11116117)
[»] scaffold0691 (1 HSPs)
scaffold0691 (16-198)||(4350-4532)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 2836800 - 2836983
Alignment:
Q  15 cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2836800 cagagagcttcagcaaatttggcaagtttttcagtgactgcattggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt 2836899  T
Q  115 ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2836900 ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 2836983  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 2854010 - 2854193
Alignment:
Q  15 cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt 114  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| | |||    
T  2854010 cagatagcttcagtaaatttggcaagttttttagtgactgcattggatcatctttcagcttggataaagccagctttatctcaacaagatactccaattt 2854109  T
Q  115 ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
     |  | ||| | ||||||  | | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2854110 tgggatccattcaggcaatgtatctagtttagctttcaaatgaagccgcctaagttttggtggggttgacgcaaagtttaagtc 2854193  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 2750932 - 2750753
Alignment:
Q  19 gagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaa 118  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    |||| |||||||| ||||| ||| | |    
T  2750932 gagcttcagaagatttggcaaatttttcagtgactgcaacggatcatctttcagcttggataaagccagacaaatctgaacaagacactcaaattttgga 2750833  T
Q  119 acccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
    | ||||| ||| ||||||| |||||||||||||||||| |||||   ||||||||||||||||||| ||||||| |||||    
T  2750832 atccaatcaggaaacttctctagtctagctttcaaatggagccgttgaagttttggtggggttgacgcaaagtttaagtc 2750753  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 5414822 - 5414643
Alignment:
Q  19 gagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaa 118  Q
    ||||||||| | |||||| ||||||||||||||  |||| ||||||||| ||||||||||||| |||| | |||||| ||||||||  ||||  || |||    
T  5414822 gagcttcagaagatttggtaagtttttcagtgatggcataggatcatctgtcagcttggataacgccatcattatctgaacaagacattcaaactttgaa 5414723  T
Q  119 acccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
    | ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||    
T  5414722 atccaatcaggcaacttctctagtctagctttcaaatgaagccgacgaagttttggcggggttgacacaaagtttaagtc 5414643  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 2761148 - 2761010
Alignment:
Q  22 cttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacc 121  Q
    ||||| || ||||||||||||||| ||||||||||  ||||||| |||||  |  |||||||||| ||||||||||||||||  ||||||||| | || |    
T  2761148 cttcaacagatttggcaagtttttaagtgactgcagtggatcatttttcaagtaagataaagccaactttatctcaacaagatactcaagttttggaatc 2761049  T
Q  122 caattaggcaacttctgtagtctagctttcaaatgaagc 160  Q
    || | ||||||  | | |||| |||||||||||||||||    
T  2761048 cattcaggcaatgtatctagtttagctttcaaatgaagc 2761010  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 2820494 - 2820353
Alignment:
Q  22 cttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacc 121  Q
    ||||||||  || |||||||||||||| || ||||  ||||||| ||||| ||| |||||||||||||| ||||| ||||||  ||||||||| | || |    
T  2820494 cttcagcaggttcggcaagtttttcagagattgcagtggatcatttttcaacttagataaagccagcttgatctccacaagagactcaagttttggaatc 2820395  T
Q  122 caattaggcaacttctgtagtctagctttcaaatgaagccgc 163  Q
    |||| ||||||  | | || ||| ||||||||||||||||||    
T  2820394 caatcaggcaatgtatctaatctggctttcaaatgaagccgc 2820353  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 2809200 - 2809120
Alignment:
Q  23 ttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaaga 103  Q
    |||| ||||| ||||||||||||||||||||| |  ||||||| ||||| ||  |||||||||||||||||||||||||||    
T  2809200 ttcaacaaatatggcaagtttttcagtgactgtaatggatcatttttcaactgagataaagccagctttatctcaacaaga 2809120  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 2770981 - 2770818
Alignment:
Q  35 ggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacccaattaggcaact 134  Q
    |||| |||||||||||||||||  |||| |||||||| | | || |||  |||  ||| || |||||| | ||||||||  | || ||||| ||||||||    
T  2770981 ggcatgtttttcagtgactgcagtggattatctttcaacatagaaaaactcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaact 2770882  T
Q  135 tctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
    |||||||||||||||||||||| ||||||  |||||  ||||||| ||| | | ||||||||||    
T  2770881 tctgtagtctagctttcaaatgtagccgcagaagttggggtggggatgatatacagttcaagtc 2770818  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 2799279 - 2799123
Alignment:
Q  38 aagtttttcagtgactgcatcggatcatctttcagcttggataaagc-cagctttatctcaacaagaccctcaagtttggaaacccaattaggcaacttc 136  Q
    ||||||| |||||||||||  ||||||| ||||| | | || ||||| |||||||| || ||| |||| ||||||||| | || |||||  |||||||||    
T  2799279 aagttttgcagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacgagacactcaagttttgcaatccaatcgggcaacttc 2799181  T
Q  137 tgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttca 194  Q
    ||||||||| |||||||||| ||||||  |||||  ||||||| ||| | ||||||||    
T  2799180 tgtagtctacctttcaaatgtagccgctgaagttggggtggggatgatataaagttca 2799123  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 2792235 - 2792107
Alignment:
Q  35 ggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacccaattaggcaact 134  Q
    ||||||||||| ||||||||||  |||||||  |||| | | || |||  |||  ||| || |||||| | ||||||||  | || ||||| ||||||||    
T  2792235 ggcaagtttttgagtgactgcagtggatcatagttcaacatagaaaaactcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaact 2792136  T
Q  135 tctgtagtctagctttcaaatgaagccgc 163  Q
    | |||||||||||||||||||| ||||||    
T  2792135 tttgtagtctagctttcaaatgtagccgc 2792107  T

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Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 11115961 - 11116117
Alignment:
Q  15 cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| || |||||| ||    
T  11115961 cagagagcttcagcagatttggcaagtttttcagtgactgcattggatcatctttcagcttggataaagctagccttatctaaacaatacactcaagatt 11116060  T
Q  115 ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttt 171  Q
     | || ||||| ||||||||| |  |||||||||||||||||||| |||| ||||||    
T  11116061 tggaatccaatcaggcaacttatcaagtctagctttcaaatgaagtcgccgaagttt 11116117  T

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Target: scaffold0691 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 4350 - 4532
Alignment:
Q  16 agagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttg 115  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||| | | | |||||| |||||||  ||| |||||     
T  4350 agagagcttcaacagatttggcaagtttttcagtgactgcattggatcgtctttcagcttggataaacctaaccttatcttaacaagaaactcgagtttt 4449  T
Q  116 gaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtc 198  Q
    | || ||||| ||| ||| ||| || ||| |||||||||||||| |||  |||||| ||||||| |||||||||||| |||||    
T  4450 ggaatccaatcaggtaacctctctaatctggctttcaaatgaagtcgctgaagtttgggtggggatgacacaaagtttaagtc 4532  T

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