View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9654_low_4 (Length: 375)
Name: NF9654_low_4
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 9108838 - 9108496
Alignment:
| Q |
20 |
atgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatgccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108838 |
atgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatgccat |
9108739 |
T |
|
| Q |
120 |
tgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaagaagaagcaatgcaaagtgtgtatgttgttgaattgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108738 |
tgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaagaagaagcaatgcaaagtgtgtatgttgttgaattgg |
9108639 |
T |
|
| Q |
220 |
tggtgaaagggtgtggaagtatttaactatttataagattgaagggacgcgtggggcccaaaaataacgtggacagcttgagaaacaattatgccgacgt |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108638 |
tggtgaaagggtgtggaaatatttaactatttataagattggagggacgcgtggggcccaaaaataacgtggacagcttgagaaacaattatgccgacgt |
9108539 |
T |
|
| Q |
320 |
tttattatatgaatgggtcagtcgttagatgtttccacaggtt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9108538 |
tttattatatgaatgggtcagtcgttagatgtttccataggtt |
9108496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 8755620 - 8755352
Alignment:
| Q |
25 |
ggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatgccattgcaa |
124 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| || || || |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8755620 |
ggagccaacgagggactgaggtcttgagccgaagccacggctgctgcgaagacaacaacgaaaaagaaggcgaaaaacttcattgatgatgccattgcaa |
8755521 |
T |
|
| Q |
125 |
cactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaagaagaagcaatgcaaagtgtgtatgttgttga---attggtg |
221 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||| ||| ||| |
|
|
| T |
8755520 |
aattatatatggaaacagagaaaattgaaaattaaaacagtggaaaattgtgaatcaagaagaagaaatgtaaattatgtatgtttttgaattatttgtg |
8755421 |
T |
|
| Q |
222 |
gtgaaagggtgtggaagtatttaactatttataagattgaagggacgcgtggggcccaaaaataacgtggacagctt |
298 |
Q |
| |
|
||||||| |||||| || |||||||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
8755420 |
gtgaaagtgtgtgggag--------tatttataagattggtgaaacgcgtggggcccacaaataacgtggacagctt |
8755352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 8746997 - 8746911
Alignment:
| Q |
21 |
tgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||||| ||| || ||||| | |||||||||||||| || |||||||| |
|
|
| T |
8746997 |
tgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaaaagaaggagaagaacttcat |
8746911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University