View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9654_low_5 (Length: 363)
Name: NF9654_low_5
Description: NF9654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9654_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 136 - 356
Target Start/End: Original strand, 37161231 - 37161451
Alignment:
| Q |
136 |
gtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgattcttccacgaagataaggatcaacggagagaaggagagtttcaac |
235 |
Q |
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| T |
37161231 |
gtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgattcttccacgaagataagggtcaacggaaagaaggagagtttcaac |
37161330 |
T |
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| Q |
236 |
ggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaagatgatctgaggttggaacaccttcagtacaatatcca |
335 |
Q |
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| T |
37161331 |
tgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaagatgatctgaggttggaacaccttcagtggaatatcca |
37161430 |
T |
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| Q |
336 |
gctaagtaccattctctgctt |
356 |
Q |
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| T |
37161431 |
gctaagtaccattctctgctt |
37161451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 198 - 356
Target Start/End: Original strand, 37155692 - 37155850
Alignment:
| Q |
198 |
cgaagataaggatcaacggagagaaggagagtttcaacggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaa |
297 |
Q |
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| T |
37155692 |
cgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaa |
37155791 |
T |
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| Q |
298 |
gatgatctgaggttggaacaccttcagtacaatatccagctaagtaccattctctgctt |
356 |
Q |
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| T |
37155792 |
gatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctctgctt |
37155850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 350
Target Start/End: Original strand, 37150504 - 37150718
Alignment:
| Q |
136 |
gtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgattcttccacgaagataaggatcaacggagagaaggagagtttcaac |
235 |
Q |
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| T |
37150504 |
gtacctgattaagttgatattgtggaatgaaaaggccttcaagggtgccggtgattgttccgcgaagatatggatcaacagagagaaggagagtttcgac |
37150603 |
T |
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| Q |
236 |
ggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaagatgatctgaggttggaacaccttcagtacaatatcca |
335 |
Q |
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| T |
37150604 |
gattagatggtcatcagggattgattcatgggcaagagaaagagaaacagtgcggagtttaagatgatccgacgttggaacaccctcaggagagtatgca |
37150703 |
T |
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| Q |
336 |
gctaagtaccattct |
350 |
Q |
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| T |
37150704 |
gctacgtaccattct |
37150718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37161112 - 37161173
Alignment:
| Q |
1 |
actgtatttactatcctttgatctaatcactcttacaactgcaaatactgtaatcacctaca |
62 |
Q |
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| T |
37161112 |
actgtatttactatccttggatctaatcactcttacaactgcaaatactgtaatgacctaca |
37161173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 37155380 - 37155426
Alignment:
| Q |
3 |
tgtatttactatcctttgatctaatcactcttacaactgcaaatact |
49 |
Q |
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| T |
37155380 |
tgtatttactatcctttgatcgaattactcttacaattgcaaatact |
37155426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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