View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9655_low_1 (Length: 643)
Name: NF9655_low_1
Description: NF9655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9655_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 85 - 632
Target Start/End: Original strand, 44559966 - 44560522
Alignment:
| Q |
85 |
aaattaattgaactttgcttgtgttgcttttttgggaatgtctactaatggttaggtttatttggatgaatgaatgattgattaatgnnnnnnnn--gtc |
182 |
Q |
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| T |
44559966 |
aaattaattgaactttgcttttgttgcttttttgtgaatgtctactaatggttaggtttatttggatgaatgaatgattgattaatgttttttttttgtc |
44560065 |
T |
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| Q |
183 |
tccaaccacttatgaaacttcaaattaactgttggtagattgcatatgtttgttttgctgtcgcgtagtgtggtttaaggtgcgtttgacttgctaaaaa |
282 |
Q |
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| T |
44560066 |
tccaaccacttatgaaacttcaaattaactgttggtagactgcataggtttgttttgcggtcgcgttgtgtggtttaaggtgcgtttgacttgctaaaaa |
44560165 |
T |
|
| Q |
283 |
acaggggattggaa-------cnnnnnnnnngtacattagtcatgattggacaaaatagatggaagggacttaacaagaacatgaattggtgtccacact |
375 |
Q |
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| T |
44560166 |
acaggggattggaatcgacaactttttttttgtacattagtcatgattggacaaaatagatggaagggacttaacaagaacatgaattcttgtccacact |
44560265 |
T |
|
| Q |
376 |
aaaacatgagacaactttttattcagagtacagttctgttttgtcttacattgttctgtccaggacttactattttgtgaatcaaacgcacccttagtct |
475 |
Q |
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| T |
44560266 |
aaaccatgagacaactttttattcagagtacagttctgttttgtcttgcattgttctgtccagtacttactattttgtgaatcaaacgcacccttagtct |
44560365 |
T |
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| Q |
476 |
ttgtagcatcaacacttctatttgaagatgtgtcccagtgtctaacacgtgtaagtgtccatcatgacactgacacatgtatttagattgaattatttaa |
575 |
Q |
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| T |
44560366 |
ttgtagcatcaacacttctatttgaagatgtgtcccagtgtctaacacgtgtaagtgtccaacatgacactgacacatgtatttagattgaattatttaa |
44560465 |
T |
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| Q |
576 |
ttttctcatattttataggtgtgacttgttagtgtctatgttatgttggtgtctgtg |
632 |
Q |
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| T |
44560466 |
ttttctcatattttataggtgtgacttgttagtgtctatgttatgttggtgtctgtg |
44560522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 44559891 - 44559946
Alignment:
| Q |
17 |
actctcagcacttggaatggg------tattattattattcaaatccttctcacta |
66 |
Q |
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| T |
44559891 |
actctcagcacttggaatgggtattattattattattattcaaatccttctcacta |
44559946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 39433524 - 39433573
Alignment:
| Q |
419 |
tcttacattgttctgtccaggacttactattttgtgaatcaaacgcaccc |
468 |
Q |
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| T |
39433524 |
tcttacactgttctgtccagtacttactattttgtgaatcgaacgcaccc |
39433573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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