View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9655_low_5 (Length: 258)
Name: NF9655_low_5
Description: NF9655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9655_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47285818 - 47286060
Alignment:
| Q |
1 |
aatgcaaagactgtgtttctgcagcatccaatcaaatccctcaaaaatgtcctaaagcaaaagaatcagttatttggttagctgaatgcatgatacgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285818 |
aatgcaaagactgtgtttctgcagcatccaatcaaatccctcaaaaatgtcctaaagcaaaagaatcagttatttggttagctgaatgcatgatacgtta |
47285917 |
T |
|
| Q |
101 |
ctcaaacgtttcattcttcaacgtagctgcagaagttccagtgcttgcgctcatgaacactggaactgtgatggagcagaaccggttcatgcaactttta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285918 |
ctcaaacgtttcattcttcaacgtagctgcagaagttccagtgcttgcgctcatgaacactggaactgtgatggagcagaaccggttcatgcaactttta |
47286017 |
T |
|
| Q |
201 |
gcggatacaatgaacgctgccgcggtagaggcggtgaatggtg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47286018 |
gcggatacaatgaacgctgccgcggtagaggcggtgaatggtg |
47286060 |
T |
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