View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_11 (Length: 375)
Name: NF9656_high_11
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 37006241 - 37005893
Alignment:
| Q |
13 |
agacattgaaaaccaaccctaactcttcatttggccttccttaaggcagtaatggaactaccatcccctttaattaaatcatacctacgtaacaagtgtg |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006241 |
agacgttgaaaaccaaccctaactcttcatttggccttccttaaggcagtaatggaactaccatcccctttaattaaatcatacctacgtaacaagtgtg |
37006142 |
T |
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| Q |
113 |
ccacaatcaacgccgcggtgaaggtcacgatgtccttacctgcacactgtttattggacccacttggcgaaccggtttgtggcccattagaccaatacaa |
212 |
Q |
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| T |
37006141 |
ccacaatcaacgccgcggtgaaggtcacgatgtccttacctgcacactgtttattggacccacttggcgaaccggtttgtggcccattagaccaatacaa |
37006042 |
T |
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| Q |
213 |
atagttcaacaactcggctcctttctctttagtgaaccgttccggtttaaattgttccggttcatcaaacacaaccgggtccctcattataagcttctga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37006041 |
atagttcaacaactcggctcctttctctttagtgaaccgttccggtttaaattgttccggttcatcaaacacgaccgggtccctcattataagcttctga |
37005942 |
T |
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| Q |
313 |
aacccacataataactcacccttcttcacattgaacgcggagtcatatg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37005941 |
aacccacataataactcacccttcttcacattgaacgcggagtcatatg |
37005893 |
T |
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