View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_17 (Length: 315)
Name: NF9656_high_17
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 40960798 - 40960510
Alignment:
| Q |
16 |
caaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960798 |
caaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaacca |
40960699 |
T |
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| Q |
116 |
cggaatcaacagccagattaatctttcaaaagttacatgaagctatatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960698 |
cggaatcaacagccagattaatctttcaaaagttacatgaagctatatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatt |
40960599 |
T |
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| Q |
216 |
tttgcggtacacaagtagttttctgaaagtgcattctgagatatttatctaacatgtgaatcattttaagatgtaccaacaattccttt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960598 |
tttgcggtacacaagtagttttctgaaagtgcattctgagatatttatctaacatgtgaatcattttaagatgtaccaacaattccttt |
40960510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 40947609 - 40947504
Alignment:
| Q |
16 |
caaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaacca |
115 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| ||||| || |||||||||||||||||| ||||||| | ||||||| |||||| ||||| |
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| T |
40947609 |
caaaaagtgacctgcatgtgttgtggctcatcgggctcatccttggatatttcctcagcagtcaaaccctcctggaattcaaatatccagtaaataacca |
40947510 |
T |
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| Q |
116 |
cggaat |
121 |
Q |
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| |||| |
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| T |
40947509 |
cagaat |
40947504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2662996 - 2663057
Alignment:
| Q |
28 |
tgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctg |
89 |
Q |
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||||||||||||| ||||| ||||| ||||||| | |||||||||||||||||| ||||| |
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| T |
2662996 |
tgcatgtgttgtttctcatcaggctccttcttggttttttcctcagcagtcaaaccctcctg |
2663057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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