View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_19 (Length: 306)
Name: NF9656_high_19
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 15311513 - 15311791
Alignment:
| Q |
10 |
ttgaatcttatactagattgcaaggtagaggaataaatttccccctaaaatgtgtgttgtgcaatcatcctttcgaggatagctaccatttatatgttca |
109 |
Q |
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| T |
15311513 |
ttgaatcttatactagattgcaaggtagaggaataaatttccccctaaaatgtgtgttgtgcaatcatcctttcgaggatagctaccatttatatgttca |
15311612 |
T |
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| Q |
110 |
gtgtactatgtttgaaaatgtttggagagttgctggtgtttagcatattatcgaattggcttcgcaacaatttgatgatgtgttggacgctattttttag |
209 |
Q |
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| T |
15311613 |
gtgtactatgtttgaaaatgtttggagagttgctggtgtttagcatattatcgaattggcttcgcaacaatttgataatgtgttggacgctattttttag |
15311712 |
T |
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| Q |
210 |
tattttgcaagtggttccagaacaacaaagagatgataactactataatgtggagtacatggaagaaccacaagattaa |
288 |
Q |
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| T |
15311713 |
tattttgcaagaggttccagaacaacaaagagatgataactactataatgtggagtacatggaagaaccacaatattaa |
15311791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 15316807 - 15317085
Alignment:
| Q |
10 |
ttgaatcttatactagattgcaaggtagaggaataaatttccccctaaaatgtgtgttgtgcaatcatcctttcgaggatagctaccatttatatgttca |
109 |
Q |
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| T |
15316807 |
ttgaatcttatactagattgcaaggtagaggaataaatttccccctaaaatgtgtgttgtgcaatcatcctttcgaggatagctaccatttatatgttca |
15316906 |
T |
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| Q |
110 |
gtgtactatgtttgaaaatgtttggagagttgctggtgtttagcatattatcgaattggcttcgcaacaatttgatgatgtgttggacgctattttttag |
209 |
Q |
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| T |
15316907 |
gtgtactatgtttgaaaatgtttggagagttgctggtgtttagcatattatcgaattggcttcgcaacaatttgataatgtgttggacgctattttttag |
15317006 |
T |
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| Q |
210 |
tattttgcaagtggttccagaacaacaaagagatgataactactataatgtggagtacatggaagaaccacaagattaa |
288 |
Q |
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| T |
15317007 |
tattttgcaagaggttccagaacaacaaagagatgataactactataatgtggagtacatggaagaaccacaatattaa |
15317085 |
T |
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