View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_20 (Length: 285)
Name: NF9656_high_20
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32014292 - 32014022
Alignment:
| Q |
1 |
caaattgtataagttggaactgtcgaggactaggtagcccgagtacagttccaatctaaagcacataggacaccaagagaaatgacaaaaaggatgatga |
100 |
Q |
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| T |
32014292 |
caaattgtataagttggaactgtcgaggattaggtagcccgagtacagttccaatctaaagcacataggacaccgagagaaatgacaaaaaggatgatga |
32014193 |
T |
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| Q |
101 |
atgtgggaatgttaggattttattttttgtatgaaagtctgaattgttgtaaggttgtgtttgaacattacccacccacgacacacttttgatattgctc |
200 |
Q |
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| T |
32014192 |
atatgggaatgttaggattttattttttgtatgagagtctgaattgttgtaaggttgtgtttgaacattacccacccacgacacactttttatattgctc |
32014093 |
T |
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| Q |
201 |
ttccaggagacaaaatcccttctaatcctcccaattatttggacaacgaatatcactcataattattgaga |
271 |
Q |
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| T |
32014092 |
ttccaggagacacaatcccttctaatcctcccaattatttggacaacgaatatcactcataattattgaga |
32014022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 32014484 - 32014384
Alignment:
| Q |
3 |
aattgtataagttggaactgtcgaggactaggtagcccgagtacagttcc-aatctaaagcacataggacaccaagagaaatgacaaaaaggatgatgaa |
101 |
Q |
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|||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||| |||||||| |
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| T |
32014484 |
aattgtataaattggaactgtcggggactgggtagcccgagtacagttccaaatctaaattacctaggacaccaagagaaatgacataaagtatgatgaa |
32014385 |
T |
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| Q |
102 |
t |
102 |
Q |
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| T |
32014384 |
t |
32014384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 32014668 - 32014570
Alignment:
| Q |
5 |
ttgtataagttggaactgtcgaggactaggtagcccgagtacagttcc-aatctaaagcacataggacaccaagagaaatgacaaaaaggatgatgaat |
102 |
Q |
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||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||||| |
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| T |
32014668 |
ttgtataagttggaactgtcggggactgagtagcccaagtacagttccaaatctaaattacctaggacaccgggagaaatgacacaaaggatgatgaat |
32014570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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