View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_21 (Length: 285)
Name: NF9656_high_21
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 5420715 - 5420448
Alignment:
| Q |
1 |
gtcgcaatgattttactaaactcgatgtcagtccaaacatgcattgaaattggaattatatgagattctaattagagtgcttttgtgcaggattatggat |
100 |
Q |
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| T |
5420715 |
gtcgcaatgattttactaaactcgatgtcagtccaaacatgcattaaaattggaattatatgagattctaattagagtgcttttgtgcaggattatggat |
5420616 |
T |
|
| Q |
101 |
gaggagagcaactctactttgacggatcaaattgctacccctaagagcaaagtttgtcctgtatgccggagagttattaataaagtaaaaagattattct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420615 |
gaggagagcaactctactttgacggatcaaattgctaaccctaagagcaaagtttgtcctgtatgccggagagttattaataaagtaaaaagattattct |
5420516 |
T |
|
| Q |
201 |
agagcaaaagagattattcaaattcaacagttaggttcatattgctgtataatatagaagttgtagaggtctct |
274 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420515 |
agagcaaaagagattat------tcaacagttaggttcatattgctgtataatatagaagttgtagaggtctct |
5420448 |
T |
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