View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9656_high_32 (Length: 240)
Name: NF9656_high_32
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24744867 - 24745092
Alignment:
| Q |
1 |
aacctgagaatattgtgtatcaacaaatgaaaattgttacgattgacaaaatacaagcataaattatgcacacataaaaatagaataaaacaaatccatc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
24744867 |
aacctgcgaatattgtgtatcaacaaatgaaaattgttacgattgacaaaatacaagcataaattatgcacatataaaaatagaattaaacaaatccatc |
24744966 |
T |
|
| Q |
101 |
aatcatgnnnnnnnnn-ttaaaatagaataatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggagctaacttact |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
24744967 |
aatcatgaagaaaaaaattaaaatagaataatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggtgctaacttatt |
24745066 |
T |
|
| Q |
200 |
tgatgtattaaggaagggatacaaat |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24745067 |
tgatgtattaaggaagggatacaaat |
24745092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 9518359 - 9518262
Alignment:
| Q |
128 |
taatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggagctaacttacttgatgtattaaggaagggatacaaat |
225 |
Q |
| |
|
||||||||| |||| ||| | |||||||||||||| ||||||||||||| |||||| | ||||||| |||| ||| | |||||| ||||| |||| |
|
|
| T |
9518359 |
taataccttcaccaacgcaccgatgactccaagactagcaagtcttaaatgctcaaattgggctaactcgcttgttgtttgaaggaatggataaaaat |
9518262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University