View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_35 (Length: 229)
Name: NF9656_high_35
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 40402648 - 40402720
Alignment:
| Q |
152 |
aacatagattttaactatagtaatgattttaactcttttgtttccggtgagaaaaaactacaataatctaagt |
224 |
Q |
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| T |
40402648 |
aacacagattttaactatagtaatgattttaactcttttgtttccagtgagaaaaaactacaataatctaagt |
40402720 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 31623070 - 31622969
Alignment:
| Q |
26 |
ttaaacccatttgggttggtc--gtggtattgatttgggacttgagag-gtgctcctcctcgatgtctc-ggtttgaatatctctgatgtcaatttgggt |
121 |
Q |
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| T |
31623070 |
ttaaacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtttgaatcactccggtgtcaatttgggt |
31622971 |
T |
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| Q |
122 |
gg |
123 |
Q |
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|| |
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| T |
31622970 |
gg |
31622969 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 28846711 - 28846787
Alignment:
| Q |
47 |
gtggtattgatttgggacttgagag-gtgctcctcctcgatgtctc-ggtttgaatatctctgatgtcaatttgggt |
121 |
Q |
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| T |
28846711 |
gtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgattatcaccgatgtcaatttgggt |
28846787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24481579 - 24481681
Alignment:
| Q |
27 |
taaacccatttgggttggtc--gtggtattgatttgggacttgagag-gtgctcctcctcgatgtctcggtttgaatatctctgatgtcaatttgggtgg |
123 |
Q |
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| T |
24481579 |
taaacccacttgagttggtctagtggtattggtttgggacttgagagtgtgctttttctcgacgtctcagttcgattatctcatatgtcaatttaggtgg |
24481678 |
T |
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| Q |
124 |
att |
126 |
Q |
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||| |
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| T |
24481679 |
att |
24481681 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 51954134 - 51954212
Alignment:
| Q |
47 |
gtggtattgatttgggacttgagagg-tgctcctcctcgatgtctc-ggtttgaatatctctgatgtcaatttgggtgg |
123 |
Q |
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| T |
51954134 |
gtggcattgacttgggacttgggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgg |
51954212 |
T |
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