View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_high_41 (Length: 209)
Name: NF9656_high_41
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 12797273 - 12797099
Alignment:
| Q |
25 |
ttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaacc-ttaatccaaatataattctaaggnnnnnnnnn-cttagactaatgat |
122 |
Q |
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| T |
12797273 |
ttgctactcaagaagaccttcgtgttagttggagtaatggagctttggaacccttaatccaaatataattctaaggttttttttttcttggactaatgat |
12797174 |
T |
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| Q |
123 |
ttcaagccttcaaatatataaaatactaattttgaatgtgagaatatcaaaatcttaaacctaccccaagagtat |
197 |
Q |
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| T |
12797173 |
ttcaagccttcaaatatataaaatacaaattttgaatgttagaatatcaaaatcttaaacctaccccaagtgtat |
12797099 |
T |
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Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12797404 - 12797306
Alignment:
| Q |
1 |
ggcatggtttttacgaattctcttttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaaccttaatccaaatataattctaagg |
99 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12797404 |
ggcatggtttttacgagttctcttttgctactcaagaaaaccttcgtgttagttggagtaatggaactttggaaccttaatccaaatataattctaagg |
12797306 |
T |
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