View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9656_high_6 (Length: 415)
Name: NF9656_high_6
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 45206770 - 45206364
Alignment:
| Q |
1 |
catgctacattgaaatcattgataaataaatatcaagatgtgtgactattttaatgcggtatagtatatggtcattgtggtaacaggagcatccagcggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206770 |
catgctacattgaaatcattgataaataaatatcgagatgtgtgactattttaatgcggtatagtatatggtcattgtggtaacaggagcatccagcggc |
45206671 |
T |
|
| Q |
101 |
attggtgctgagactgctcgtgtccttgctttgcgcggtgttcatgtgattatgggtgtgagaaacttggttgctgctaaagatgtcaaagatacaatac |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206670 |
attggcgctgagactgctcgtgtccttgctttgcgcggtgtgcatgtgattatgggtgtgagaaacttggttgctgctaaagatgtcaaagatacaatac |
45206571 |
T |
|
| Q |
201 |
tcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgcatctgagtataattcttctggtcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206570 |
tcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgcatctgagtataattcttctggtcg |
45206471 |
T |
|
| Q |
301 |
tccactgaacatcttgatgtaagaaaatgagattaatttagtcatataattatcagatttatttttactgttttattgaagttgttagttacttgttctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206470 |
tccactgaacatcttgatgtaagaaaatgagattaatttagtcatataattatcagatttatttttactgttttattgaagttgttagttacttgttctg |
45206371 |
T |
|
| Q |
401 |
tctcatt |
407 |
Q |
| |
|
||||||| |
|
|
| T |
45206370 |
tctcatt |
45206364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 65 - 279
Target Start/End: Complemental strand, 45233829 - 45233615
Alignment:
| Q |
65 |
tatatggtcattgtggtaacaggagcatccagcggcattggtgctgagactgctcgtgtccttgctttgcgcggtgttcatgtgattatgggtgtgagaa |
164 |
Q |
| |
|
||||||| |||||||||| ||||||||| | |||||||| ||||||||| |||||||||||| ||||| | |||||||||||||||||||| |||||| |
|
|
| T |
45233829 |
tatatggacattgtggtagtaggagcatcaaacggcattgacgctgagactactcgtgtccttgttttgcacagtgttcatgtgattatgggtatgagaa |
45233730 |
T |
|
| Q |
165 |
acttggttgctgctaaagatgtcaaagatacaatactcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgt |
264 |
Q |
| |
|
| | ||||| ||||||||||||||||||| |||| |||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
45233729 |
atatagttgccgctaaagatgtcaaagatataatagtcaaggacattccctctgctaaacttgatatcatggagttagatctcaactcattggattctgt |
45233630 |
T |
|
| Q |
265 |
caagaaatttgcatc |
279 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45233629 |
caagaaatttgcatc |
45233615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 78 - 327
Target Start/End: Complemental strand, 45232574 - 45232325
Alignment:
| Q |
78 |
tggtaacaggagcatccagcggcattggtgctgagactgctcgtgtccttgctttgcgcggtgttcatgtgattatgggtgtgagaaacttggttgctgc |
177 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||||| ||||| ||||||||||| ||||| ||||||||| ||| ||| ||||| ||||||||| |
|
|
| T |
45232574 |
tggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttagaaataaggttgctgc |
45232475 |
T |
|
| Q |
178 |
taaagatgtcaaagatacaatactcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgca |
277 |
Q |
| |
|
||| ||| ||||||| ||||||| ||||| ||||||||||| ||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45232474 |
taatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgca |
45232375 |
T |
|
| Q |
278 |
tctgagtataattcttctggtcgtccactgaacatcttgatgtaagaaaa |
327 |
Q |
| |
|
|| || | |||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45232374 |
tccgaatttaattcctctggtcttccattgaacatcttgatgtaagaaaa |
45232325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 81 - 327
Target Start/End: Complemental strand, 45248753 - 45248507
Alignment:
| Q |
81 |
taacaggagcatccagcggcattggtgctgagactgctcgtgtccttgctttgcgcggtgttcatgtgattatgggtgtgagaaacttggttgctgctaa |
180 |
Q |
| |
|
||||||||||| |||| || ||||| | ||||||| | ||||| ||||||||||| ||||| ||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
45248753 |
taacaggagcaaccagtggtattggagttgagactacgcgtgttcttgctttgcgtggtgtccatgtgattatggctgttcgaaataaggttgctgctaa |
45248654 |
T |
|
| Q |
181 |
agatgtcaaagatacaatactcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgcatct |
280 |
Q |
| |
|
||| |||| || ||||||| ||||| |||||||| || ||| |||||| |||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
45248653 |
tgatatcaatgaagcaatacttaaggagattccctcggctaaagttgatgtcatggagttagatctcagttcattggaatctgtcaaaaaatttgcatca |
45248554 |
T |
|
| Q |
281 |
gagtataattcttctggtcgtccactgaacatcttgatgtaagaaaa |
327 |
Q |
| |
|
|| | |||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45248553 |
gaatttaattcctctggtcttccattgaacatcttgatgtaagaaaa |
45248507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 325
Target Start/End: Complemental strand, 45213808 - 45213564
Alignment:
| Q |
81 |
taacaggagcatccagcggcattggtgctgagactgctcgtgtccttgctttgcgcggtgttcatgtgattatgggtgtgagaaacttggttgctgctaa |
180 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| | ||||| |||||||| | ||||| ||||||||||||| ||| ||||| |||| |||||| |
|
|
| T |
45213808 |
taacaggagcatccagtggtattggcactgagactacgcgtgttcttgctttacatggtgtccatgtgattatggctgttagaaataaggttaatgctaa |
45213709 |
T |
|
| Q |
181 |
agatgtcaaagatacaatactcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgcatct |
280 |
Q |
| |
|
|| || ||| ||||||| || || ||||||||||| ||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
45213708 |
taataccagagaagcaatacttaaagagattccctcagcaaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgcatcc |
45213609 |
T |
|
| Q |
281 |
gagtataattcttctggtcgtccactgaacatcttgatgtaagaa |
325 |
Q |
| |
|
|| | |||||| ||||||| ||| ||||||| |||||||||||| |
|
|
| T |
45213608 |
gaatttaattcctctggtcttccgttgaacatattgatgtaagaa |
45213564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 45233565 - 45233529
Alignment:
| Q |
341 |
gtcatataattatcagatttatttttactgttttatt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45233565 |
gtcatataattatcagatttatttttactgttttatt |
45233529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 19278542 - 19278502
Alignment:
| Q |
125 |
cttgctttgcgcggtgttcatgtgattatgggtgtgagaaa |
165 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19278542 |
cttgccttgcgtggtgttcatgtgattatgggagtgagaaa |
19278502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 19295947 - 19295907
Alignment:
| Q |
125 |
cttgctttgcgcggtgttcatgtgattatgggtgtgagaaa |
165 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19295947 |
cttgccttgcgtggtgttcatgtgattatgggagtgagaaa |
19295907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University