View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_105 (Length: 208)
Name: NF9656_low_105
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_105 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 46466503 - 46466324
Alignment:
| Q |
30 |
ttggcttctaaccacaaatcttataaactttaatcgtgtccctgtaaaactcta-ttaaacaagggcagtacccttaacatattctgtaacagccaaagc |
128 |
Q |
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| T |
46466503 |
ttggcttctaaccacaaaccctatagactttaatcatgtccctataaaactctacttacacaagggcagtacccttaacatattctgtaacagccagagc |
46466404 |
T |
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| Q |
129 |
aatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
208 |
Q |
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| T |
46466403 |
aatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
46466324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 46471708 - 46471529
Alignment:
| Q |
30 |
ttggcttctaaccacaaatcttataaactttaatcgtgtccctgtaaaactcta-ttaaacaagggcagtacccttaacatattctgtaacagccaaagc |
128 |
Q |
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| T |
46471708 |
ttggcttctaaccacaaaccctatagactttaatcatgtccctataaaactctacttacacaagggcagtacccttaacatattctgtaacagccagagc |
46471609 |
T |
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| Q |
129 |
aatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
208 |
Q |
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| T |
46471608 |
aatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
46471529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 46344433 - 46344622
Alignment:
| Q |
19 |
agtttcatatattggcttctaaccacaaatcttataaactttaatcgtgtccctgtaaaactctattaaacaagggcagtacccttaacatattctgtaa |
118 |
Q |
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| T |
46344433 |
agtttcatatattgactgctaaccacaaattctataagccttaacagtgtcactaaagaaatctattacacaagggaggtacccttaacatactctgtaa |
46344532 |
T |
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| Q |
119 |
cagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
208 |
Q |
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| T |
46344533 |
aggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacac |
46344622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 46452089 - 46451934
Alignment:
| Q |
53 |
taaactttaatcgtgtccctgtaaaactctattaaacaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattct |
152 |
Q |
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| T |
46452089 |
taaaccttaatcgtcttcctatagaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattct |
46451990 |
T |
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| Q |
153 |
tccattccaaagctctgcatttgaggacatgataccttttgacttagactcaacac |
208 |
Q |
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| T |
46451989 |
tccattccatagttctgcatctgaagacataacaccttttgacttggactcaacac |
46451934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 46463030 - 46462902
Alignment:
| Q |
80 |
tctattaaacaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
179 |
Q |
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| T |
46463030 |
tctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
46462931 |
T |
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| Q |
180 |
catgataccttttgacttagactcaacac |
208 |
Q |
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| T |
46462930 |
cataacaccttttgacttggactcaacac |
46462902 |
T |
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