View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_11 (Length: 423)
Name: NF9656_low_11
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 30656654 - 30656258
Alignment:
| Q |
18 |
aatgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
117 |
Q |
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|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30656654 |
aatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
30656555 |
T |
|
| Q |
118 |
aaaggcactatgaacaaagaaagatgttatcaaaaggtgtaaaga---ataaagcagggaaacaagatgaatcagaaggatcaagtgtattggtgttaga |
214 |
Q |
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| T |
30656554 |
agaggcactatgaacaaagaaagttgttatcaaaaggtgtaaagaataataaagcagggagacaagatgaatcagaaggatcaagtgttttggtgttaga |
30656455 |
T |
|
| Q |
215 |
ggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagcaacttctactgaagtaattcgtatcnnnnnnnnnnnnnn |
314 |
Q |
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| T |
30656454 |
ggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagcaacttctactgaagttattcgtatcttttgttttttgta |
30656355 |
T |
|
| Q |
315 |
nnnnnngtaaacaattatttagctagggcattccattgaaccatgtgcttcttcaagttctagatgcagtgttttcctctattcagtactcgagtat |
411 |
Q |
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| T |
30656354 |
atttttgtaaacaattatttagctagggcattccattgaaccatgtgcttcttcaagttctagatgcagtgttttcctctattcagtactcgagtat |
30656258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 30689709 - 30689452
Alignment:
| Q |
19 |
atgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
118 |
Q |
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||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
30689709 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactaaaaga |
30689610 |
T |
|
| Q |
119 |
aaggcactatgaacaaagaaagatgttatcaaaaggtgtaaagaataaagcagggaaacaagatgaatcagaaggatcaagtgtattggtgttagaggat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30689609 |
gaggcactatgaacaaagaaagatgttatcaaaaggtgtaaagaataaagcagggaaacaagatgaatcagaaggatcaagtgttttggtgttagaggat |
30689510 |
T |
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| Q |
219 |
ttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca |
276 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
30689509 |
ttgggagttgaatatcttgagcaacttctatccatatctgataatcaaagtacaagca |
30689452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 30698596 - 30698335
Alignment:
| Q |
18 |
aatgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
117 |
Q |
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|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30698596 |
aatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
30698497 |
T |
|
| Q |
118 |
aaaggcactatgaacaaagaaagatgttatcaaaaggtgtaaag---aataaagcagggaaacaagatgaatcagaaggatcaagtgtattggtgttaga |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
30698496 |
aaaggcactatgaacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatgaatcagagggatcaagtgttttggtgttaga |
30698397 |
T |
|
| Q |
215 |
ggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca |
276 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||| |
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| T |
30698396 |
ggatttgggagttgaatatctcgagcaacttctaacaatatctgataatcaaagttcaagca |
30698335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 30671815 - 30671554
Alignment:
| Q |
18 |
aatgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
117 |
Q |
| |
|
||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || | |
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| T |
30671815 |
aatgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaagg |
30671716 |
T |
|
| Q |
118 |
aaaggcactatgaacaaagaaagatgttatcaaaaggtgtaaag---aataaagcagggaaacaagatgaatcagaaggatcaagtgtattggtgttaga |
214 |
Q |
| |
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| || |||| |||||||||||| ||||||||||||| | |||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
30671715 |
agagacactgtgaacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatcaatcagagggatcaagtgttttggtgttaga |
30671616 |
T |
|
| Q |
215 |
ggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || || ||| |||||| |||||||| |
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| T |
30671615 |
ggatttgggagttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca |
30671554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 30718752 - 30718622
Alignment:
| Q |
19 |
atgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
118 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
30718752 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcactaaaaga |
30718653 |
T |
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| Q |
119 |
aaggcactatgaacaaagaaagatgttatca |
149 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30718652 |
gaggcactatgaacaaagaaagatgttatca |
30718622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 30710479 - 30710210
Alignment:
| Q |
18 |
aatgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaag |
117 |
Q |
| |
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|||||| | ||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
30710479 |
aatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcactcaaag |
30710380 |
T |
|
| Q |
118 |
aaaggcactatgaacaaagaaa---gatgtta---tcaaaaggtgtaaagaataaagcagggaaa---caagatgaatcagaagg---atcaagtgtatt |
205 |
Q |
| |
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| || ||||| | |||||||| | || | |||||| || |||| ||||||||||||| ||||| | |||| || ||||||||| || |
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| T |
30710379 |
agagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaagtgtgtt |
30710280 |
T |
|
| Q |
206 |
ggtgttagaggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||| |
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| T |
30710279 |
ggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
30710210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 56539264 - 56539332
Alignment:
| Q |
18 |
aatgctgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcaga |
86 |
Q |
| |
|
|||| ||||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||| |
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| T |
56539264 |
aatgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcaga |
56539332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 56539355 - 56539407
Alignment:
| Q |
123 |
cactatgaacaaagaaagatgttatcaaaaggtgtaaagaataaagcagggaa |
175 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||| | |||||||||||| |
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|
| T |
56539355 |
cactgtgaacaaagaaagatgttatccaaaggtgtaaatagtaaagcagggaa |
56539407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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