View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9656_low_17 (Length: 406)
Name: NF9656_low_17
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 16708407 - 16708024
Alignment:
| Q |
15 |
gggtggttgagagcgaaattgaaaagcatgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcaga |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16708407 |
gggtggttgagagcgaaattgagaagcatgctgctgatgggcttgggagggtggattatgctcttgcaaacggtggagcctgggttgtgagacattcaga |
16708308 |
T |
|
| Q |
115 |
ggcttatgatgtgcagagggggaattggttcttgttgaatgctagaaatggtgttcatcacaatgctgataagatgttgaaaccaagttttggggagcct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16708307 |
ggcttatgatgtgcagagggggaattggttcttgttgaatgctagaaatggtgttcatcacaatgctgataagatgttgaaaccaagttttggggagcct |
16708208 |
T |
|
| Q |
215 |
ggacagtgttttccgttgaagggtagtagcgggtttgttcaaattaggttgcgcgctgaaatcgttcctgaggctgttaccttggaacatgtagcaaagg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16708207 |
ggacagtgttttccgttgaagggtagtagcgggtttgttcaaattaggttgcgcgctgaaatcgttcctgaggctgttaccttggaacatgtagcaaagg |
16708108 |
T |
|
| Q |
315 |
tgatgccatacatattctttttaactatatacagttgttgttatctttgtcttgtcatgatgtgaatcagttagtagtattatct |
399 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16708107 |
tgatgccatgcatattctttttaactatatacagttgttgttatc-ttgtcttgtcatgatgtgaatcagttagtagtataatct |
16708024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 40316612 - 40316725
Alignment:
| Q |
41 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
40316612 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40316711 |
T |
|
| Q |
141 |
ggttcttgttgaat |
154 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40316712 |
ggttcttgttgaat |
40316725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 40326686 - 40326799
Alignment:
| Q |
41 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
40326686 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40326785 |
T |
|
| Q |
141 |
ggttcttgttgaat |
154 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40326786 |
ggttcttgttgaat |
40326799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University