View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_2 (Length: 572)

Name: NF9656_low_2
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_2
NF9656_low_2
[»] chr7 (4 HSPs)
chr7 (5-345)||(9416317-9416665)
chr7 (491-549)||(9417209-9417267)
chr7 (491-545)||(38735919-38735973)
chr7 (377-426)||(9417095-9417144)
[»] chr3 (2 HSPs)
chr3 (31-135)||(1460719-1460819)
chr3 (491-541)||(46690626-46690676)
[»] chr5 (5 HSPs)
chr5 (491-545)||(2858216-2858270)
chr5 (491-545)||(2846395-2846449)
chr5 (491-541)||(4650347-4650397)
chr5 (491-545)||(41982536-41982590)
chr5 (491-543)||(38734698-38734750)
[»] chr2 (2 HSPs)
chr2 (491-545)||(6407920-6407974)
chr2 (494-533)||(39324794-39324833)
[»] chr1 (3 HSPs)
chr1 (491-545)||(8245448-8245502)
chr1 (491-545)||(42107014-42107068)
chr1 (491-532)||(28867155-28867196)
[»] scaffold0118 (1 HSPs)
scaffold0118 (276-333)||(9554-9611)
[»] chr8 (2 HSPs)
chr8 (497-545)||(6924211-6924259)
chr8 (494-541)||(39141875-39141922)
[»] chr4 (1 HSPs)
chr4 (494-545)||(27764034-27764085)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 345
Target Start/End: Original strand, 9416317 - 9416665
Alignment:
Q  5 taggccaggggttttat---aacacta--atgagaagtaaaaacgtatgacaca---ctaaaggaaataaagtggaattagtaggaaattaaagtggtgg 96  Q
    |||||||||||||||||   |||||||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  9416317 taggccaggggttttattataacactataatgagaagtaaaaacgtatgacacatgactaaaggaaataaagtggaattagtaggaaattaaagtggtgg 9416416  T
Q  97 ttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgacattgaaattgtgtaaggg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9416417 ttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgacgttgaaattgtgtaaggg 9416516  T
Q  197 aaggaaggataaatggtgtgtgaatcaaaattgatacctatgaattcaacgactatcagtgaaatgcacttggttgcaattattataagttttgattcag 296  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9416517 aaggaaggataaatggtgtgtgaatcaaaattgatacctataaattcaacgactatcagtgaaatgcacttggttgcaattattataagttttgattcag 9416616  T
Q  297 cacctatatcacttttcattcttgccaaaaatggttatatgtatgatgt 345  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9416617 cacctatattacttttcattcttgccaaaaatggttatatgtatgatgt 9416665  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 9417209 - 9417267
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgt 549  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  9417209 atgttgattaatatgatctaattatttttactttaaatttttccatttgatgtaactgt 9417267  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 38735919 - 38735973
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||| |||| |||||||||||||||||||||||| | ||||||||||    
T  38735919 atgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 9417095 - 9417144
Alignment:
Q  377 cgtaaggatgattagtttatcaaaagaacctttttcatcaacacaaccac 426  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  9417095 cgtaaggataattagcttatcaaaagaacctttttcatcatcacaaccac 9417144  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 1460819 - 1460719
Alignment:
Q  31 gagaagtaaaaacgtatgacacactaaaggaaataaagtggaattagtaggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagt 130  Q
    ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    |||||||||||||||| |||||||||    
T  1460819 gagaagtaaaaccgcattacacactaaaggaaataaagtggaattagtaggaaattaaactggtgattat----tgtggaggacaaaaacgaaatgcagt 1460724  T
Q  131 attaa 135  Q
     ||||    
T  1460723 tttaa 1460719  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 46690676 - 46690626
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgat 541  Q
    |||||||||||||| ||||||||||||||| ||||||||||| | ||||||    
T  46690676 atgttgattgatatcatctaattatttttgttttaaattttttcatttgat 46690626  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 2858216 - 2858270
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||    
T  2858216 atgttgattgatgtgatctatttatttttgttttaaatttttccatttgatgtga 2858270  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 2846395 - 2846449
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||  ||||||||||||||||| |||||| |||||| ||||||||||    
T  2846395 atgttgattgaggtgatctaattatttttgttttaaaattttccatttgatgtga 2846449  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 4650347 - 4650397
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgat 541  Q
    |||||||||||| ||||||||||||||||| ||||||||||| | ||||||    
T  4650347 atgttgattgatgtgatctaattatttttgttttaaattttttcatttgat 4650397  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 41982536 - 41982590
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    ||||||||||||  |||||||||||||||| ||||||||||| | ||||||||||    
T  41982536 atgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtga 41982590  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 38734698 - 38734750
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgt 543  Q
    |||||||||||| ||||||||||||||||| |||||| |||||  ||||||||    
T  38734698 atgttgattgatgtgatctaattatttttgttttaaacttttctatttgatgt 38734750  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 6407974 - 6407920
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||| |||| |||||||||||| || |||||||||| ||||||||||    
T  6407974 atgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtga 6407920  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 39324833 - 39324794
Alignment:
Q  494 ttgattgatatgatctaattatttttgctttaaatttttc 533  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  39324833 ttgattgatgtgatctaattatttttgttttaaatttttc 39324794  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 8245448 - 8245502
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||| |||| |||||||||||| || |||||||||| ||||||||||    
T  8245448 atgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtga 8245502  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 42107068 - 42107014
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  42107068 atgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtga 42107014  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 28867196 - 28867155
Alignment:
Q  491 atgttgattgatatgatctaattatttttgctttaaattttt 532  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  28867196 atgttgattgatatgatttaattatttttattttaaattttt 28867155  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 9611 - 9554
Alignment:
Q  276 ttattataagttttgattcagcacctatatcacttttcattcttgccaaaaatggtta 333  Q
    ||||||||||||||||| || |||||||   ||||||| |||||||||||||||||||    
T  9611 ttattataagttttgatccatcacctatgctacttttccttcttgccaaaaatggtta 9554  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 6924211 - 6924259
Alignment:
Q  497 attgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||    
T  6924211 attgatatgatctaattatttttgttttaattttttctatttgatgtga 6924259  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Complemental strand, 39141922 - 39141875
Alignment:
Q  494 ttgattgatatgatctaattatttttgctttaaatttttccgtttgat 541  Q
    |||||||||||||| |||||||||||| ||||||||||| | ||||||    
T  39141922 ttgattgatatgatttaattatttttgttttaaattttttcatttgat 39141875  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 545
Target Start/End: Complemental strand, 27764085 - 27764034
Alignment:
Q  494 ttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 545  Q
    ||||||||| |||| |||||||||||| ||||||||||| | ||||||||||    
T  27764085 ttgattgatgtgatttaattatttttgttttaaatttttgcatttgatgtga 27764034  T

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