View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_24 (Length: 382)
Name: NF9656_low_24
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 1607880 - 1607515
Alignment:
| Q |
1 |
aatgattttatatttttctatttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatgtaagataaattattg |
100 |
Q |
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| T |
1607880 |
aatgattttatatttttctatttaaaatttaagtattgtgctgctaaaaagttattcaataactttatttaggaagaattaaatgaaagataaattatgg |
1607781 |
T |
|
| Q |
101 |
aatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1607780 |
aatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataacaagacacaaagagcaat |
1607681 |
T |
|
| Q |
201 |
tataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttac |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
1607680 |
tataatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgtaatctccagatttaa |
1607581 |
T |
|
| Q |
301 |
atttgattcatatgataatattgatgtcataacactatcgcttatgtac-ttttatatgaatatat |
365 |
Q |
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| T |
1607580 |
atttgattcatatgataatattgatgtcataacactatcgcttatgtactttttatatgaatatat |
1607515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 1630852 - 1630509
Alignment:
| Q |
22 |
ttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatgtaagataaattattgaatgtttattttgtgacatac |
121 |
Q |
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| T |
1630852 |
ttaaaatttaagtattgtactgctaaaaggttattcaataactttattcaggaagaattaaatgaaagataaattattgagtgtttattttgtgacatac |
1630753 |
T |
|
| Q |
122 |
atagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630752 |
atagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaag |
1630653 |
T |
|
| Q |
222 |
tatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttacatttgattcatatgataatat |
321 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1630652 |
tatattcaatattttaggtatataatgttttaattttttcctaaaaaaaatgttaaaattttgtaatctccagatttacatttgattcatataataatat |
1630553 |
T |
|
| Q |
322 |
tgatgtcataacactatcgcttatgtacttttatatgaatatat |
365 |
Q |
| |
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||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
1630552 |
tgaagtcatagcactatcgcttatgtacttttatatgaatatat |
1630509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 1624887 - 1624534
Alignment:
| Q |
1 |
aatgattttatatttttctatttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatgtaagataaattattg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
1624887 |
aatgattttatttttttctatttaaaatt-aagtattgtactgctaaaaaattattcaataactttatttaggaagaattaaatgaaagataaattattg |
1624789 |
T |
|
| Q |
101 |
aatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||| |
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| T |
1624788 |
aatgtttattttgtgacatacatagagtaatataaatatgatagggttaaaaatgggtatataaaaatgaattttaaaataagaagacac--agagcaat |
1624691 |
T |
|
| Q |
201 |
tataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttac |
300 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
1624690 |
tataatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgtaatctccagatttaa |
1624591 |
T |
|
| Q |
301 |
atttgattcatatgataatattgatgtcataacactatcgcttatgtacttttatat |
357 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1624590 |
atttaattcatatgataatattgatgtcataacactatggcttatgtacttttatat |
1624534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 10819521 - 10819635
Alignment:
| Q |
147 |
ttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataa |
246 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||| ||||||||||||| |||||||||| |||||||| | |||| |||||||| |||||||||||||| |
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| T |
10819521 |
ttgaaaacgggaagctaaaaaagaattttaaaatatgaagacacaaagaacaattataatttgtagatgatgaagtttcttcaattttttaggtatataa |
10819620 |
T |
|
| Q |
247 |
tgttttaattttttc |
261 |
Q |
| |
|
|||||||||||||| |
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| T |
10819621 |
agttttaattttttc |
10819635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 1603086 - 1602996
Alignment:
| Q |
160 |
gataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaa |
254 |
Q |
| |
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|||||||| |||||||||||| ||||||||| ||||||||||| |||| ||| | ||||||||||||| |||||||||||||||||||||| |
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| T |
1603086 |
gataaaaaataattttaaaatatgaagacaca----gcaattataatttgtatatgatgaagtatcttcaattttttaggtatataatgttttaa |
1602996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 10819711 - 10819765
Alignment:
| Q |
312 |
atgataatattgatgtcataacactatcgcttatgtac-ttttatatgaatatat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
10819711 |
atgataatattgatgtcataacactatcgcttatgtactttttatataaatatat |
10819765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1631370 - 1631340
Alignment:
| Q |
1 |
aatgattttatatttttctatttaaaattta |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1631370 |
aatgattttatatttttctatttaaaattta |
1631340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10819172 - 10819219
Alignment:
| Q |
1 |
aatgattttatatttttctatttaaaatttaagtattgtactgctaaaa |
49 |
Q |
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||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
10819172 |
aatgattttatttttttctatttaaaa-gtaagtattgtagtgctaaaa |
10819219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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