View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_25 (Length: 382)
Name: NF9656_low_25
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 9435442 - 9435814
Alignment:
| Q |
10 |
taatactgaaaaagtgaaaatgggctactattactatgcagaactgaaatcaatattttaagcaataaaattatttaataggctatgtaaaactataagc |
109 |
Q |
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| T |
9435442 |
taatactgaaaaggtgaaaatgggctactattactatgcagaactgaaatcaatattttaagcaataaaattatttaataggctatgtaaaactataagc |
9435541 |
T |
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| Q |
110 |
ttgtgtttggaaaacaaagctatggtgccacagcagggatagtaggatgttaggccttggtgatgtcatctgccgtgcattcagctctaaattaccgtgt |
209 |
Q |
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| T |
9435542 |
ttgtgtttggaaaacaaagctatggtgccacagcagggatggtaggatgttaggccttggtgatgtcattttccgtgcattcagctctaaattaccgtgt |
9435641 |
T |
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| Q |
210 |
ttccaaacatattgtatatagcttaacatcgatttataacgatggtaggtgagtttgtagaatctccaggtagcagtcaaggtagatttctgagttgtcc |
309 |
Q |
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| T |
9435642 |
ttccaaacatattgtatatagcttaacatcgatttataacgatggtaggtgagtttgtagaatctccaggtagcagtcaaggtagatttctgagttgtcc |
9435741 |
T |
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| Q |
310 |
aattccttgtacatgcattcctttaggagtttgaaatggctctggaggcatttccaaggactcaacatctcct |
382 |
Q |
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| T |
9435742 |
aattccttgtacaggcattcctttaggagtttgaaatggctttggaggcatttccaaggactcaacatctcct |
9435814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 9487981 - 9488338
Alignment:
| Q |
26 |
aaaatgggctactattactatgcagaactgaaatcaa---tattttaagcaataaaattatttaataggctatgtaaaactataagcttgtgtttggaaa |
122 |
Q |
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| T |
9487981 |
aaaatgggctactgttactattcagaactgaaatcaaaattattttaagcaataacattatttaataggctatgtaaaacta--agctcgtgtttggaaa |
9488078 |
T |
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| Q |
123 |
acaaagctatggtgccacagcagggatagtaggatgttaggccttggtgatgtcatctgccgtgcattcagctctaaattaccgtgtttccaaacatatt |
222 |
Q |
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| T |
9488079 |
acaaaactacggtgccacagcaggtatggtagaatgttaggccttggagatgtcattcgccgtgcattcaactcgaaattactgtgtttccaaacatgtt |
9488178 |
T |
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| Q |
223 |
gtatatagcttaacatcgatttataacgatggtaggtgagtttgtagaatctccaggtagcagtcaaggtagatttctgagttgtccaattccttgtaca |
322 |
Q |
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| T |
9488179 |
gtatctagcttaacgtcgatttataacaatggtaagcgagtttgtagaatctccaggtagcagccaaggtagatttctgagttgtccaattccttgtaca |
9488278 |
T |
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| Q |
323 |
tgcattcctttaggagtttgaaatggctctggaggcatttccaaggactcaacatctcct |
382 |
Q |
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| T |
9488279 |
ggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctcct |
9488338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 9458816 - 9459175
Alignment:
| Q |
24 |
tgaaaatgggctactattactatgcagaactgaaatcaa---tattttaagcaataaaattatttaataggctatgtaaaactataagcttgtgtttgga |
120 |
Q |
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|||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
9458816 |
tgaaaatgggatactgttactatttagaactgaaatcaaaattattttaagcaataaaattatttaatagtttatgtaaaacta--agcttgtgtttgga |
9458913 |
T |
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| Q |
121 |
aaacaaagctatggtgccacagcagggatagtaggatgttaggccttggtgatgtcatctgccgtgcattcagctctaaattaccgtgtttccaaacata |
220 |
Q |
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||||||| ||| |||||||| ||||||| ||||||||||||||||||| |||||||| | | ||||||||| |||||||||||||||||||||||||| |
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| T |
9458914 |
aaacaaaactacggtgccactccagggatggtaggatgttaggccttggagatgtcattttctgtgcattcaactctaaattaccgtgtttccaaacatg |
9459013 |
T |
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| Q |
221 |
ttgtatatagcttaacatcgatttataacgatggtaggtgagtttgtagaatctccaggtagcagtcaaggtagatttctgagttgtccaattccttgta |
320 |
Q |
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|||||| ||||||||| |||||||| ||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
9459014 |
ttgtatctagcttaacgtcgatttacaacaatggtaagcgagtttgtagaatctccaggtagcagccaaggtagatttctgagttgtccaatgccttgta |
9459113 |
T |
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| Q |
321 |
catgcattcctttaggagtttgaaatggctctggaggcatttccaaggactcaacatctcct |
382 |
Q |
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|| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9459114 |
caggcattccttttgcagtttgaaatggcttaggaggcatttccaaggactcaacatctcct |
9459175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 9462643 - 9463002
Alignment:
| Q |
24 |
tgaaaatgggctactattactatgcagaactgaaatcaa---tattttaagcaataaaattatttaataggctatgtaaaactataagcttgtgtttgga |
120 |
Q |
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|||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
9462643 |
tgaaaatgggatactgttactatttagaactgaaatcaaaattattttaagcaataaaattatttaatagtttatgtaaaacta--agcttgtgtttgga |
9462740 |
T |
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| Q |
121 |
aaacaaagctatggtgccacagcagggatagtaggatgttaggccttggtgatgtcatctgccgtgcattcagctctaaattaccgtgtttccaaacata |
220 |
Q |
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| T |
9462741 |
aaacaaaactacggtgccactccagggatggtaggatgttaggccttggagatgtcattttctgtgcattcaactctaaattaccgtgtttccaaacatg |
9462840 |
T |
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| Q |
221 |
ttgtatatagcttaacatcgatttataacgatggtaggtgagtttgtagaatctccaggtagcagtcaaggtagatttctgagttgtccaattccttgta |
320 |
Q |
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| T |
9462841 |
ttgtatctagcttaacgtcgatttacaacaatggtaagcgagtttgtagaatctccaggtagcagccaaggtagatttctgagttgtccaatgccttgta |
9462940 |
T |
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| Q |
321 |
catgcattcctttaggagtttgaaatggctctggaggcatttccaaggactcaacatctcct |
382 |
Q |
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|| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9462941 |
caggcattccttttgcagtttgaaatggcttaggaggcatttccaaggactcaacatctcct |
9463002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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