View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9656_low_26 (Length: 381)
Name: NF9656_low_26
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 35742620 - 35742975
Alignment:
| Q |
10 |
ggtggttagaatgttagaaataattgactgcattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaacct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742620 |
ggtggttagaatgttagaaataattgactgcattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaacct |
35742719 |
T |
|
| Q |
110 |
tgtccagaagctgacccataggagccactaccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgccgccattctaatagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35742720 |
tgtccagaagctgacccataggagccactaccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgctgccattctaatagc |
35742819 |
T |
|
| Q |
210 |
ttccaacttctttgtagggaagccttcgaatcgtgatagcacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactagtggaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742820 |
ttccaacttctttgtagggaagccttcgaatcgcgatagcacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactagtggaaa |
35742919 |
T |
|
| Q |
310 |
tataaacctaatggacatgagttttgctaacttacctgtgattcatcagttagatt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742920 |
tataaacctaatggacatgagttttgctaacttacctgtgattcatcagttagatt |
35742975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University