View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_3 (Length: 562)
Name: NF9656_low_3
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 7282547 - 7282007
Alignment:
| Q |
1 |
atattaaggatcaatgccttctcaagaaacttccaaataataggaacattgttgtcccaacaaatgtaagaaaccaaaaactcagcaagttctgaagagg |
100 |
Q |
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| T |
7282547 |
atattaaggatcaatgccttctcaagaaacttccaaataataggaacattgttgtcccaacaaatgtaagaaaccaaaaactcagcaagttctgaagagg |
7282448 |
T |
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| Q |
101 |
gtacagattttcctgatgagttcaaattggaatacatttcaagggcccaagccaaaggatcactacccttttcttgtgcttcctttgtaacctcttccat |
200 |
Q |
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| T |
7282447 |
gtacagattttcctgatgagttcaaattggaatacatttcaagggcccaagccaaaggatcactacccttttcttgtgcttcctttgtaacctcttccat |
7282348 |
T |
|
| Q |
201 |
tgacctacgcatagaaatctccatggtaaggttgtagcagaggatccaactctccttcaaaatcttacctgcaacaagaacaagaagaacaataacatgt |
300 |
Q |
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| T |
7282347 |
tgacctacgcatagaaatctccatggtaaggttgtagcagaggatccaactctccttcaaaatcttacctgcaacaagaacaagaagaacaataacatgt |
7282248 |
T |
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| Q |
301 |
gtttgtgtttgtaactctcacatgtatctctgtcaccactttgcccttggttttgtgtgaatgaatgcaggatttatgttatgtactaggattttgttat |
400 |
Q |
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| T |
7282247 |
gtttgtgtttgtaactctcacatgtatctctgtcaccactttgcccttggttttgtgtgaatgaatgcaggatttatgttatgtactaggattttgttat |
7282148 |
T |
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| Q |
401 |
ttaagtcaaacatttcaggggtatttttgggatttcattctggttatcggnnnnnnnnacttaattaatcggccatcggtttttcacagaagaatcgaga |
500 |
Q |
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| T |
7282147 |
ttaagtcaaacacttcaggggtatttttgggatttcattctggttatcggttttttttacttaattaatcggccatcggtttttcacagaagaatcgaga |
7282048 |
T |
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| Q |
501 |
ttctctccttatcgggtttttctttatcgtaaattgagtca |
541 |
Q |
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| T |
7282047 |
ttctctccttatcgggtttttctttatcgtaaattgagtca |
7282007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 7280502 - 7280421
Alignment:
| Q |
152 |
ccaaaggatcactacccttttcttgtgcttcctttgtaacctcttccattgacctacgcatagaaatctccatggtaaggtt |
233 |
Q |
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||||| ||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
7280502 |
ccaaaagatcactaccctttttttgtgctttctatgtgacctcttacattgacctacgcatagaaatattcatggtaaggtt |
7280421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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