View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_37 (Length: 331)
Name: NF9656_low_37
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 1357213 - 1356904
Alignment:
| Q |
1 |
aaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataagggaagtttgatgaga |
100 |
Q |
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| T |
1357213 |
aaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataagggaagtttgatgaga |
1357114 |
T |
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| Q |
101 |
ttaacaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattttgtgaaagaatct |
200 |
Q |
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| T |
1357113 |
ttaaaaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattttgtgaaagaatct |
1357014 |
T |
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| Q |
201 |
tggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgtttttcttgtcatccatgaatgaatgaat |
300 |
Q |
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| T |
1357013 |
tggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgtttttcttgttatccatgaatgaatgaat |
1356914 |
T |
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| Q |
301 |
gttgttgctg |
310 |
Q |
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| T |
1356913 |
gttgttgctg |
1356904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 12845785 - 12845690
Alignment:
| Q |
177 |
agtgaccattttgtgaaagaatcttggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgt |
272 |
Q |
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| T |
12845785 |
agtgacccttttgagcaagaatcttggccaactcaaaataagggtatatgtgtcccatagctagccatggaaccattacaacatgaagaggcttgt |
12845690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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