View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_4 (Length: 546)

Name: NF9656_low_4
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_4
NF9656_low_4
[»] chr4 (15 HSPs)
chr4 (20-489)||(36369476-36369944)
chr4 (19-296)||(36388616-36388902)
chr4 (20-333)||(36434499-36434813)
chr4 (21-284)||(36374915-36375177)
chr4 (21-284)||(36428021-36428283)
chr4 (21-284)||(36418041-36418303)
chr4 (21-195)||(36406048-36406218)
chr4 (35-195)||(36398314-36398470)
chr4 (413-534)||(36417528-36417649)
chr4 (416-534)||(36426356-36426474)
chr4 (413-534)||(36397940-36398061)
chr4 (421-534)||(36412197-36412310)
chr4 (413-530)||(36388165-36388282)
chr4 (417-515)||(36404894-36404992)
chr4 (375-536)||(36374203-36374368)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Complemental strand, 36369944 - 36369476
Alignment:
Q  20 ttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369944 ttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatt 36369845  T
Q  120 tgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctctccagacaaatcttggtttgattga 219  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  36369844 tgttgtagctgttataattgttctaaagctgaagaatggatgatttgaatgtgtgtagctttgagcaccaatctctccagacgaatattggtttgattga 36369745  T
Q  220 tgcagcattttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttgaaggttaaatttccatttagctctcaaaaaatcttc 319  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369744 tgcagcattttatctgaagttacagaaggaatgaggtaggattttaatcaatttacacattttgaaggttaaatttccatttagctctcaaaaaatcttc 36369645  T
Q  320 gattataaattttgaaactaataggacacattttgcataacagactgcnnnnnnntaatgaaatataaagaacaagggatgtcatccctaaatatcacat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||| |||||||||||||||||||||||||||||||    
T  36369644 gattataaattttgaaactaataggacacattttgcataacagactgcaaaaaaataatgaattataaggaacaagggatgtcatccctaaatatcacat 36369545  T
Q  420 accctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaact 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36369544 accctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattg-aactatagaaact 36369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 36388902 - 36388616
Alignment:
Q  19 attcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaat 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  36388902 attcacttcttgattcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgaccacaat 36388803  T
Q  119 ttgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatc---tctccagacaaatcttggtttga 215  Q
    || |||||||||| ||||| ||| |||||||||| || |||||||||| |||||||||||||||||||  | ||   ||||||||  ||||||||||| |    
T  36388802 ttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaa 36388703  T
Q  216 ttgatgcagca------ttttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttgaaggttaaatttc 296  Q
    |||   || ||      ||| ||||||||||||||| || |||||||| |||||||||||| | ||||||||| |||| || |||||    
T  36388702 ttgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaagatttcaatcaactaacacattttaaagggtatatttc 36388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 36434813 - 36434499
Alignment:
Q  20 ttcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatt 119  Q
    ||||||||||| |  ||||||||||||||| ||    || | ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  36434813 ttcacttcttgcaatagtagctcaatgtagggt----ctcacttaccttatagacagagccaaatccaccttgtccaagcttattctcatgaccacaatt 36434718  T
Q  120 tgttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatc---tctccagacaaatcttggtttgat 216  Q
    | |||||||||| ||||| ||| |||||||||| || |||||||||| |||||||||||||||| ||||  ||   |||||| |  ||||||||||| ||    
T  36434717 tcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgaacaccgttcttttctccaaaggaatcttggtttaat 36434618  T
Q  217 tgatgcagcattttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttgaaggttaaatttccatttagctctcaaaa--aa 314  Q
    ||  ||| ||||||||||||||||||||| || |||||||| |||||||||||| ||| |||||||||||| |  |||||  ||| ||||||||||  ||    
T  36434617 tgccgcaccattttatctgaagttacaaatggcatgaggtaagatttcaatcaacttaaacattttgaagggtgtatttctttttggctctcaaaaagaa 36434518  T
Q  315 tcttcgattataaattttg 333  Q
    |||| ||||||| ||||||    
T  36434517 tcttagattatacattttg 36434499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 36375177 - 36374915
Alignment:
Q  21 tcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaattt 120  Q
    |||||| ||| || |||| |||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  36375177 tcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagagccaaatccaccttgtccaagcttattctgatgactaaaatct 36375082  T
Q  121 gttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctctcc---agacaaatcttggtttgatt 217  Q
     ||||||||||||| || ||| |||||||||| || || ||||||| |||||||||||||||||||||| ||||| |   |||  ||||||||||  |||    
T  36375081 cttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcaccattctcttcttcagaggaatcttggttaaatt 36374982  T
Q  218 gatgcagcattttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttga 284  Q
    |  ||| ||||||||||||||||||||| || | |||||| |||||||||||| || || |||||||    
T  36374981 gccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttga 36374915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 36428283 - 36428021
Alignment:
Q  21 tcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaattt 120  Q
    |||||| ||| || |||| |||||||||||||| ||||||    ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  36428283 tcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagaaccaaatccaccttgtccaagcttattctcatgaccacaattt 36428188  T
Q  121 gttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctct---ccagacaaatcttggtttgatt 217  Q
     |||||||||| ||||| ||| |||||||||| || |||||||||| ||||||||||||||| | | || |||||   |||||  |||||||||||| ||    
T  36428187 cttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgggtatcattctcttccccagaggaatcttggtttggtt 36428088  T
Q  218 gatgcagcattttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttga 284  Q
    |  ||| ||||||||||||||||||||| |  || ||||| |||||||||||| ||| |||||||||    
T  36428087 gcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaaacattttga 36428021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 36418303 - 36418041
Alignment:
Q  21 tcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaattt 120  Q
    |||||| ||| || |||| |||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||||| ||  | |||||    
T  36418303 tcactttttgcatgagtatctcaatgtagagtttcactta----ccttatagacagagccaaatccaccttgtccaagcttattctcaagatcacaattt 36418208  T
Q  121 gttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctct---ccagacaaatcttggtttgatt 217  Q
     |||||||||| ||||| ||| |||||||||| || |||||||||| ||| ||||||||||| | | || |||||   |||||  |||||||||||| ||    
T  36418207 cttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtgttgctttgggtatcattctcttccccagaggaatcttggtttggtt 36418108  T
Q  218 gatgcagcattttatctgaagttacaaaaggaatgaggtaggatttcaatcaatttacacattttga 284  Q
    |  ||| ||||||||||||||||||||| |  || ||||| |||||||||||| ||| |||||||||    
T  36418107 gcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaaacattttga 36418041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 36406218 - 36406048
Alignment:
Q  21 tcacttcttgaatcagtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaattt 120  Q
    |||||||||| |||||||||| ||||||||||| |||| |    |||| ||||||||||||||||||||||||||||||||||||| ||||  | |||||    
T  36406218 tcacttcttgcatcagtagcttaatgtagagtttcactca----ccttgtagacagagccaaatccaccttgtccaagcttattcttatgatcacaattt 36406123  T
Q  121 gttgtagctgttattattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctct 195  Q
     |||||||||| ||||| ||| |||||||||| || |||||||||| |||| ||||| || |||||||| |||||    
T  36406122 tttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtctgttgtttggagcaccattctct 36406048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 36398470 - 36398314
Alignment:
Q  35 agtagctcaatgtagagttgcacttaattaccttatagacagagccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttat 134  Q
    ||||||||||||||||| |    ||| |||||||||| |||||||||||||||||||  ||||||||||||| ||||||  ||| | |||||||||  ||    
T  36398470 agtagctcaatgtagaggt----ttacttaccttataaacagagccaaatccacctttcccaagcttattctgatgactgcaatatcttgtagctgacat 36398375  T
Q  135 tattgttctaaagctgaagaatggtagatttgaatgtgtgttgctttgagcaccaatctct 195  Q
    ||| ||| ||| |||||| || |||||||||| ||||||| ||||||||||| || |||||    
T  36398374 tatcgttttaaggctgaaaaagggtagatttggatgtgtggtgctttgagcatcattctct 36398314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 36417649 - 36417528
Alignment:
Q  413 atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt 512  Q
    |||||||||||||||| |||| || ||||||| ||| || |||  | ||||||| ||||||||||||||||||| |||| ||||  ||||||||||||||    
T  36417649 atcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctt 36417550  T
Q  513 tttaccaaggattcctttgctt 534  Q
    |||| |||||| ||||||||||    
T  36417549 tttatcaaggactcctttgctt 36417528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 534
Target Start/End: Complemental strand, 36426474 - 36426356
Alignment:
Q  416 acataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt 515  Q
    ||||||||||||| |||| || ||||||| ||| || |||  | ||||||| ||||||||||||||||||| |||| ||||  |||||||||||||||||    
T  36426474 acataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctcttttt 36426375  T
Q  516 accaaggattcctttgctt 534  Q
     ||||||| ||||||||||    
T  36426374 gccaaggactcctttgctt 36426356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 36398061 - 36397940
Alignment:
Q  413 atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt 512  Q
    ||||||||||||||||||||| || ||||||| ||| || ||| || ||||| | ||| ||||||||||| |||||||||| ||   |||| ||||||||    
T  36398061 atcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagccaacctctt 36397962  T
Q  513 tttaccaaggattcctttgctt 534  Q
    |||| |||||| ||||||||||    
T  36397961 tttatcaaggactcctttgctt 36397940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 534
Target Start/End: Complemental strand, 36412310 - 36412197
Alignment:
Q  421 ccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctttttaccaa 520  Q
    |||||||| |||| || ||||||| ||| || |||  | ||||||| ||||||||||||||||||| |||| ||||  |||||||||||||||||| |||    
T  36412310 ccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaa 36412211  T
Q  521 ggattcctttgctt 534  Q
    ||| ||||||||||    
T  36412210 ggactcctttgctt 36412197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 530
Target Start/End: Complemental strand, 36388282 - 36388165
Alignment:
Q  413 atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt 512  Q
    ||||||||||||  ||||||| || ||||||| | | || ||| || ||||||||||||||||||| ||||||| |||| ||||  ||||| ||||||||    
T  36388282 atcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagccaacctctt 36388183  T
Q  513 tttaccaaggattccttt 530  Q
    |||| |||| | ||||||    
T  36388182 tttatcaagaactccttt 36388165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 515
Target Start/End: Complemental strand, 36404992 - 36404894
Alignment:
Q  417 cataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt 515  Q
    |||||||||| |||||| || ||||||| |||  | ||| || ||||||| |||||||||||| |||||| |||||||||  ||||| |||||||||||    
T  36404992 cataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagccaacctcttttt 36404894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 536
Target Start/End: Complemental strand, 36374368 - 36374203
Alignment:
Q  375 taatgaaatataaagaacaagggatgtcatccctaaat----atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggac 470  Q
    |||||||||||||||||||  |||| | |||| ||||     |||||||||| |||||| ||| || |||| ||||| ||| | | || |||||||||||    
T  36374368 taatgaaatataaagaacagaggatattatccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggac 36374269  T
Q  471 aattgcaactatagaaactaccagaaccgcagctaacctctttttaccaaggattcctttgcttct 536  Q
    ||| |||||| ||||| | |||||||  ||||  | |||||||| ||| |||| ||||||||||||    
T  36374268 aatcgcaactgtagaagcaaccagaattgcagaaatcctcttttgacctaggactcctttgcttct 36374203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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