View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_40 (Length: 317)

Name: NF9656_low_40
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_40
NF9656_low_40
[»] chr7 (4 HSPs)
chr7 (1-307)||(25480644-25480950)
chr7 (3-290)||(9600409-9600697)
chr7 (3-290)||(9827980-9828268)
chr7 (1-55)||(13768957-13769011)
[»] chr6 (1 HSPs)
chr6 (3-267)||(3024996-3025260)
[»] chr2 (4 HSPs)
chr2 (69-269)||(21830101-21830301)
chr2 (93-269)||(33035265-33035441)
chr2 (91-240)||(14833170-14833319)
chr2 (89-209)||(3250381-3250501)
[»] chr8 (1 HSPs)
chr8 (3-199)||(32555485-32555681)
[»] chr5 (4 HSPs)
chr5 (54-175)||(32225565-32225686)
chr5 (80-197)||(19841994-19842111)
chr5 (78-139)||(17204934-17204995)
chr5 (81-117)||(11879384-11879420)
[»] scaffold1951 (1 HSPs)
scaffold1951 (81-269)||(728-916)
[»] chr3 (1 HSPs)
chr3 (81-260)||(30187518-30187697)
[»] chr1 (1 HSPs)
chr1 (128-295)||(32798996-32799163)
[»] chr4 (1 HSPs)
chr4 (81-143)||(10358778-10358840)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 25480950 - 25480644
Alignment:
Q  1 aacatttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattatttgtagtgttggaaaaaattatgttgtttcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25480950 aacatttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattatttgtagtgttggaaaaaattatgttgtttcttt 25480851  T
Q  101 ccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25480850 ccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttc 25480751  T
Q  201 actgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaagaattcacatcgaaaaaatagatgacacatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25480750 actgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaagaattcacatcgaaaaaatagatgacacatg 25480651  T
Q  301 gtctctg 307  Q
    |||||||    
T  25480650 gtctctg 25480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 9600409 - 9600697
Alignment:
Q  3 catttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattattt-gtagtgttggaaaaaattatgttgtttctttc 101  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||  ||| ||||| |  |||||||||||||||||||||||    
T  9600409 cattttagctttcaaccaagcaaaagacaaaaacttaacgttctccaataaattcaccaaatccttttgtagtatgtgaaaaaattatgttgtttctttc 9600508  T
Q  102 cttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttca 201  Q
    |||||| || ||||| ||||||||||||||||||||||  ||  |||||| |||||||  ||||||||||||||  ||||| || |||||||||||||||    
T  9600509 cttccaaacgacccaacagcctgcgtgccagatcactttaagaaaagaatgagtaaaccatggtaatcccgccaaatgaccaaattgatgaagatgttca 9600608  T
Q  202 ctgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaagaattcacatcgaaaaaatag 290  Q
    || ||| |  ||||||||||| |||||||| | |||||||||||||| || ||||| || || ||||| || |||||||||||||||||    
T  9600609 ctcacaaactctggaggtgtgcaattgataccgatccactgataaacaagatgccataagctgccaaaaaaatcacatcgaaaaaatag 9600697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 9827980 - 9828268
Alignment:
Q  3 catttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattattt-gtagtgttggaaaaaattatgttgtttctttc 101  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||  ||| ||||| |  |||||||||||||||||||||||    
T  9827980 cattttagctttcaaccaagcaaaagacaaaaacttaacgttctccaataaattcaccaaatccttttgtagtatgtgaaaaaattatgttgtttctttc 9828079  T
Q  102 cttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttca 201  Q
    |||||| || ||||| ||||||||||||||||||||||  ||  |||||| |||||||  ||||||||||||||  ||||| || |||||||||||||||    
T  9828080 cttccaaacgacccaacagcctgcgtgccagatcactttaagaaaagaatgagtaaaccatggtaatcccgccaaatgaccaaattgatgaagatgttca 9828179  T
Q  202 ctgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaagaattcacatcgaaaaaatag 290  Q
    || ||| |  ||||||||||| |||||||| | |||||||||||||| || ||||| || || ||||| || |||||||||||||||||    
T  9828180 ctcacaaactctggaggtgtgcaattgataccgatccactgataaacaagatgccataagctgccaaaaaaatcacatcgaaaaaatag 9828268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13769011 - 13768957
Alignment:
Q  1 aacatttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagt 55  Q
    ||||||||||||||| ||||| ||||||||| | |||||||| | ||||||||||    
T  13769011 aacatttttgctttcaaccaaacaaaagacataaacttaacgctatccaataagt 13768957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 3024996 - 3025260
Alignment:
Q  3 catttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattatttgtagtgttggaaaaaattatgttgtttctttcc 102  Q
    |||||| ||||||  ||||| |||||||||| ||||||||||||||||||| ||  ||||||  |||| ||| |  ||||||||| | ||||||||||||    
T  3024996 cattttagctttcatccaagaaaaagacaaaaacttaacgttctccaataaattaaccaaatcctttgcagtatgtgaaaaaattctcttgtttctttcc 3025095  T
Q  103 ttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttcac 202  Q
    ||||| |  |||||| |||||||||||||||||||||| ||  |||||| ||||||| | |||||||||||||  || || || ||||||| ||||||||    
T  3025096 ttccaaatgacccagtagcctgcgtgccagatcacttgaagaaaagaatgagtaaaccgcggtaatcccgccaaatgcccaaattgatgaatatgttcac 3025195  T
Q  203 tgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactacca 267  Q
    |||| ||  | |||| | | ||||||||| |||||||||||||||| || ||||| || ||||||    
T  3025196 tgacggactccggagatataaaattgataccaatccactgataaacaagatgccataagctacca 3025260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 21830301 - 21830101
Alignment:
Q  69 tgtagtgttggaaaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaat 168  Q
    |||||||| || ||||||| | |||||| ||| |||||| |||||||| ||||| ||||||||||||| ||||||  |||||| |||||||   ||||||    
T  21830301 tgtagtgtgggtaaaaattctattgttttttttcttccaaacaacccaacagccggcgtgccagatcatttggagaaaagaatgagtaaaccacggtaat 21830202  T
Q  169 cccgccatgtgaccgaactgatgaagatgttcactgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaa 268  Q
    ||||||| ||| || ||||||||||||||||||| ||  ||  |||||||||||||||||||  | |||||||| ||||| ||||||||||| || ||||    
T  21830201 cccgccaagtgtccaaactgatgaagatgttcacggatggactctggaggtgtgaaattgatgtcgatccactggtaaacaaggtgccacaagctgccaa 21830102  T
Q  269 a 269  Q
    |    
T  21830101 a 21830101  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 33035265 - 33035441
Alignment:
Q  93 gtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatga 192  Q
    ||||| ||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| ||||||| | ||||| |||||||| |  || |||||||||    
T  33035265 gtttcgttccttccaaacaacccaacagccggcgtgccagatcacttggaggaaagaatgagtaaaccgcggtaaccccgccatattgccaaactgatga 33035364  T
Q  193 agatgttcactgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaa 269  Q
    ||||| ||||  |||||  ||| ||| |||||||||||| ||||||||||||| |  || ||||||||||| |||||    
T  33035365 agatgatcacaaacagattctgaaggagtgaaattgataccaatccactgatacaaaagatgccacaaactgccaaa 33035441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 14833319 - 14833170
Alignment:
Q  91 ttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgat 190  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  |||||| ||||||| |  ||||||| ||||  || || |||| ||    
T  14833319 ttgtttctttccttccaaacaacccaacagccggcgtgccagatcacttggagaaaagaatgagtaaaccgcagtaatcctgccaaatggccaaactaat 14833220  T
Q  191 gaagatgttcactgacagaacctggaggtgtgaaattgataacaatccac 240  Q
    ||||||| |||  ||| ||  ||| ||| |||||||||||| | ||||||    
T  14833219 gaagatgatcatggacggactctgaaggagtgaaattgataccgatccac 14833170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 3250381 - 3250501
Alignment:
Q  89 tgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactg 188  Q
    ||||||||||||||||||| |||| |||   ||  || |||||| |||| | ||| ||||||| ||||||  | ||||| |||||||||||||| || ||    
T  3250381 tgttgtttctttccttccaaacaatccaaacgcaagcatgccaggtcaccttgagataagaatgagtaaatcgcggtaaccccgccatgtgaccaaattg 3250480  T
Q  189 atgaagatgttcactgacaga 209  Q
    ||||||||| |||||||||||    
T  3250481 atgaagatgatcactgacaga 3250501  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 32555681 - 32555485
Alignment:
Q  3 catttttgctttctaccaagcaaaagacaaatacttaacgttctccaataagttctccaaattatttgtagtgttggaaaaaattatgttgtttctttcc 102  Q
    |||||| | |||| |||||||||||||||||||||||||||| |||||||| | | ||||||  |  | | ||| || ||||| | ||||||||||||||    
T  32555681 cattttagttttcgaccaagcaaaagacaaatacttaacgttgtccaataaatgcgccaaatcgtaagcattgtggggaaaaaatttgttgtttctttcc 32555582  T
Q  103 ttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgtt 199  Q
    |||||| ||||||||||||| ||||||||||||||||||||  || ||| |||| ||||| |||||||||| |  || || || |||||||||||||    
T  32555581 ttccagtcaacccagcagccggcgtgccagatcacttggagaaaataatgagtagactgttgtaatcccgcaaaatgtccaaaatgatgaagatgtt 32555485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 32225565 - 32225686
Alignment:
Q  54 gttctccaaattatttgtagtgttggaaaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataa 153  Q
    |||||||||||| ||||| ||||||||||   || || ||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  32225565 gttctccaaattgtttgttgtgttggaaatttttttgctgtttctttcctgtcagacaacccagcagcctgcgtgccagatcacgtggaggaaagaataa 32225664  T
Q  154 gtaaactgtggtaatcccgcca 175  Q
    ||| |||   ||||||||||||    
T  32225665 gtagactacagtaatcccgcca 32225686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 19841994 - 19842111
Alignment:
Q  80 aaaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtg 179  Q
    ||||||| ||||||||||||||||| || |||| |||    |  || ||||||||||||| |||| ||| ||| |||||  ||||||| |||||||||||    
T  19841994 aaaaaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgccagatcactttgaggaaaggatatgtaaaacgtggtaaccccgccatgtg 19842093  T
Q  180 accgaactgatgaagatg 197  Q
    ||| ||||||||||||||    
T  19842094 accaaactgatgaagatg 19842111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 17204934 - 17204995
Alignment:
Q  78 ggaaaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcactt 139  Q
    |||||||||| || | ||| |||  |||||||||||||||||||| ||||||||||||||||    
T  17204934 ggaaaaaattctgctatttattttattccagacaacccagcagccggcgtgccagatcactt 17204995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 11879384 - 11879420
Alignment:
Q  81 aaaaattatgttgtttctttccttccagacaacccag 117  Q
    |||||| |||||||||||||||||||||| |||||||    
T  11879384 aaaaatcatgttgtttctttccttccagataacccag 11879420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 269
Target Start/End: Original strand, 728 - 916
Alignment:
Q  81 aaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtga 180  Q
    ||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  |||||| ||||||| ||||||  | || ||  |||    
T  728 aaaaattctattgtttctttccttccaaacaacccaacagccggcgtgccagatcacttggagaaaagaatgagtaaaccgtggtacactcgtcaaatga 827  T
Q  181 ccgaactgatgaagatgttcactgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaaactaccaaa 269  Q
     | |||||||||||||| || | |||  |  ||| ||| |||||||||||| | ||||||||||| || || |||||||| || |||||    
T  828 tcaaactgatgaagatgatctcggacgaattctgaaggagtgaaattgataccgatccactgatacacaagatgccacaatctgccaaa 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 260
Target Start/End: Original strand, 30187518 - 30187697
Alignment:
Q  81 aaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtga 180  Q
    ||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  |||||| || |||| | ||||  | |||||  |||    
T  30187518 aaaaattctattgtttctttccttccaaacaacccaacagccggcgtgccagatcacttggagaaaagaatgagcaaaccgcggtacactcgccaaatga 30187617  T
Q  181 ccgaactgatgaagatgttcactgacagaacctggaggtgtgaaattgataacaatccactgataaacgaggtgccacaa 260  Q
    || || ||||||||||| || |  ||| |  ||||||| |||||||||||| | ||||||||||| || || ||||||||    
T  30187618 ccaaattgatgaagatgatctcgcacaaactctggaggagtgaaattgataccgatccactgatacacaagatgccacaa 30187697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 32798996 - 32799163
Alignment:
Q  128 gccagatcacttggaggtaagaataagtaaactgtggtaatcccgccatgtgaccgaactgatgaagatgttcactgacagaacctggaggtgtgaaatt 227  Q
    ||||||||||||||||  |||||| |||  || | |||||||| ||||  || || || ||||| |||||||| | ||| ||    |||||||||||| |    
T  32798996 gccagatcacttggagaaaagaatgagttgaccgcggtaatcctgccaaatgtccaaattgatgtagatgttctcagacggattggggaggtgtgaaaat 32799095  T
Q  228 gataacaatccactgataaacgaggtgccacaaactaccaaagaattcacatcgaaaaaatagatgac 295  Q
    |||||| |||||| ||||||| ||||||||||| ||||| ||||| || ||  |||||||||||||||    
T  32799096 gataacgatccaccgataaacaaggtgccacaagctaccgaagaagtcgcaatgaaaaaatagatgac 32799163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 10358840 - 10358778
Alignment:
Q  81 aaaaattatgttgtttctttccttccagacaacccagcagcctgcgtgccagatcacttggag 143  Q
    ||||||| | || |||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  10358840 aaaaattcttttatttctttccttccaaacaacccaacagccggcgtgccagatcacatggag 10358778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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