View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_44 (Length: 314)
Name: NF9656_low_44
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 34691302 - 34691588
Alignment:
| Q |
18 |
ataaagagttgcaagaatcatgtactaatttcatatcaacgtaattgtatgaccttcacattatctatgcaagaatcatgtagtaatttcatattatcat |
117 |
Q |
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| T |
34691302 |
ataaagagttgcaagaatcatgtactaatttcatatcaacgtaattgtatgaccttcacattatctatgcaagaatcatgtagtaatttcatattatcat |
34691401 |
T |
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| Q |
118 |
accttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattgcctc |
217 |
Q |
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| T |
34691402 |
accttggatccgtagcatcccttctcacaaaccatcaactcctccacccccattttttgaagatatcaccggcaactatttgatgaactcatattgcctc |
34691501 |
T |
|
| Q |
218 |
tactggaaccattcggtggtaaacactcttttcaaccaacaagacacagcggctgtgattacaacgcctctctttcgtcgtcctttg |
304 |
Q |
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| T |
34691502 |
tactggaaccattcggtggtaaacactcttttcaaccaacaagacgcagcggctgtgattacaacgcctctctttcgtcgtcctttg |
34691588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 52966053 - 52965959
Alignment:
| Q |
119 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattg |
213 |
Q |
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| T |
52966053 |
ccttggatacgtagcattccttcacataaaccttcaactacaccacccccattttttgaagacctcacagtcaatcaattgatgaattcagattg |
52965959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 51492966 - 51492872
Alignment:
| Q |
119 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattg |
213 |
Q |
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| T |
51492966 |
ccttggatacataacattccttcacataaaccttcaactccgccacccccattttttgaagacctcacagtcaattaattgatgaattcagattg |
51492872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 42577962 - 42577853
Alignment:
| Q |
119 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattgcctct |
218 |
Q |
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|||||||| |||||||| ||||| || ||||| |||||||| ||||||| |||||||||||| |||| ||||| | |||||||| |||||||| |||| |
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| T |
42577962 |
ccttggatacgtagcattccttcacacaaaccttcaactccgccacccctattttttgaagacctcacagtcaatcaattgatgaattcagattgtctct |
42577863 |
T |
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| Q |
219 |
actggaacca |
228 |
Q |
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|||||||| |
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| T |
42577862 |
catggaacca |
42577853 |
T |
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