View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_50 (Length: 292)
Name: NF9656_low_50
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 2461512 - 2461746
Alignment:
| Q |
66 |
gggttttaaaaccgaatcgaattcccctttcttcagatgggcacgagtctgatctgattactttgttagaaaagaaaagaagttgaaattttcaaaagct |
165 |
Q |
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| T |
2461512 |
gggttttaaaaccgaatcgaattcccctttcttcagatgggcacgagtctgatctgattactttgttagaacagaaaagaagttgaaattttcaaaagct |
2461611 |
T |
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| Q |
166 |
aagaatattctctaatcaaattgaaacattatcttgtaaatgtcttaatc----------------aaagtgaaagggacagatagcattattagtatca |
249 |
Q |
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| T |
2461612 |
aagaatattctctaatcaaattgaaacattatcttgtaaatgtcttcatcaattagtaggtactctaaagtgaaagggacagatagcattattagtatca |
2461711 |
T |
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| Q |
250 |
atctgtttttcacactatgaagtatacaaacacca |
284 |
Q |
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| T |
2461712 |
atctgtttttcacactttgaagtatacaaacacca |
2461746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2460468 - 2460536
Alignment:
| Q |
1 |
tcaattaaccctcccaattttatttatcaaaattcgcctaataattatgcataaagaaccatattgggt |
69 |
Q |
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| T |
2460468 |
tcaactaaccctgccaattttattcatcaaaattcgcctaataattatgcataaagaaccatattgggt |
2460536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25607637 - 25607596
Alignment:
| Q |
1 |
tcaattaaccctcccaattttatttatcaaaattcgcctaat |
42 |
Q |
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| T |
25607637 |
tcaactaaccctgccaattttattcatcaaaattcgcctaat |
25607596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 16920689 - 16920653
Alignment:
| Q |
155 |
tttcaaaagctaagaatattctctaatcaaattgaaa |
191 |
Q |
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| T |
16920689 |
tttcaaaagctaataatattctctaatcgaattgaaa |
16920653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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