View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_55 (Length: 283)
Name: NF9656_low_55
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_55 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 45206757 - 45207036
Alignment:
| Q |
4 |
ttcaatgtagcatgcatatatagggtttcaaattgtggatgtggttgcattacaatttacaatcacaattttttatatttcaaaaatctgctgtcaaaat |
103 |
Q |
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| T |
45206757 |
ttcaatgtagcatgcatatacagggtttcaaattgtggtcgtggttgcattacaatttacaatcacaattttttatatttcaaaaatttgctgtcaaaat |
45206856 |
T |
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| Q |
104 |
gtgcccacagttagattcacaaaccattttaaaaaaccttatggatatgtaatccagaagaagataaagagnnnnnnnctaagagataaatcatgattaa |
203 |
Q |
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| T |
45206857 |
gtgcccacagttagattcacaaaccattttaaaaaatcttatggatatgtaatccagaagaagataaagagaaaaaaactaagagataaatcatgattaa |
45206956 |
T |
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| Q |
204 |
tctaataaaactgtttgcaaatttcaatattttgagattgactgtagatcattattatttactaccaccactagtagttt |
283 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45206957 |
tctaagaaaactgtttgcaaatttcaatattttgagattggctgtagatcattattatttactaccaccactagtagttt |
45207036 |
T |
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