View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_58 (Length: 283)

Name: NF9656_low_58
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_58
NF9656_low_58
[»] chr3 (18 HSPs)
chr3 (12-267)||(26109387-26109638)
chr3 (12-267)||(26138290-26138537)
chr3 (48-267)||(26203695-26203915)
chr3 (12-135)||(28479066-28479189)
chr3 (145-267)||(26231668-26231792)
chr3 (34-135)||(28508201-28508302)
chr3 (18-135)||(28137144-28137261)
chr3 (28-135)||(26231838-26231945)
chr3 (28-131)||(26126275-26126378)
chr3 (28-128)||(26176329-26176429)
chr3 (154-267)||(26126109-26126217)
chr3 (145-264)||(26176163-26176277)
chr3 (17-94)||(8538345-8538422)
chr3 (17-94)||(28680491-28680568)
chr3 (12-99)||(27357062-27357149)
chr3 (17-94)||(28152478-28152555)
chr3 (17-92)||(27921033-27921108)
chr3 (21-99)||(27458047-27458125)
[»] chr7 (1 HSPs)
chr7 (18-135)||(8692206-8692323)
[»] chr2 (3 HSPs)
chr2 (12-99)||(22400976-22401063)
chr2 (12-99)||(22792680-22792767)
chr2 (12-99)||(22966153-22966240)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 26109638 - 26109387
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtg 111  Q
    ||||||||||||||||||||     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26109638 ataggcattttaagtcaacan----aagaacttaatcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaaggg 26109543  T
Q  112 cccctattggctattagactatatattttttcacttgtattctagattctttaaataggactaaattaggatttattgaaattagattttcttgatgttg 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  26109542 cccctattggctattagattatatattttttcacttgtattctagattctttaaataggactaaattaggatttgttgaatttagattttgttgatgttg 26109443  T
Q  212 atcactctaggattctcttttccttgtgatttggtggatttctctgcactcttttt 267  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  26109442 atcactttagggttctcttttccttgtgatttggtggattgctctgcactcttttt 26109387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 26138537 - 26138290
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtg 111  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| | | |||||| ||||||||||||||||||||||||| ||||    
T  26138537 ataggcattttaagtcaacatgtggaagatcttaagcaacagttgacatcctctgaagttgttttggagcgtatcattcaacaagaggtggttttgagtg 26138438  T
Q  112 cccctattggctattagactatatattttttcacttgtattctagattctttaaataggactaaattaggatttattgaaattagattttcttgatgttg 211  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||| |||||||||    
T  26138437 cccctattggctattagactatat--tttttcacttgtattctagattctttaaataggacta-----ggattt-ttgaaattagattttgttgatgttg 26138346  T
Q  212 atcactctaggattctcttttccttgtgatttggtggatttctctgcactcttttt 267  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  26138345 atcactctaagattctcttttccttgtgatttggtggattgctctgcactcttttt 26138290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 48 - 267
Target Start/End: Complemental strand, 26203915 - 26203695
Alignment:
Q  48 caacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgcccctattggctattagactatatatttttt-cact 146  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  26203915 caacagttgacatcctctgaagctgttttggagagtatcattcaacaagaggtggttttcagttcccctattggctattagactatatatttttttcact 26203816  T
Q  147 tgtattctagattctttaaataggactaaattaggatttattgaaattagattttcttgatgttgatcactctaggattctcttttccttgtgatttggt 246  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  26203815 tgtattctagattctttaaataggactaaattaggatttgttgaatttagattttgtttatgttgatcactctagggttctcttttccttgtgatttggt 26203716  T
Q  247 ggatttctctgcactcttttt 267  Q
    ||||| |||||||||||||||    
T  26203715 ggattgctctgcactcttttt 26203695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 28479189 - 28479066
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtg 111  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||    
T  28479189 ataggcattttaagtcaacatgtggaagatcttaagcaacaattgacatcctctgaagctgttttggagactatcattcaacaagaggcggttttaagtg 28479090  T
Q  112 cccctattggctattagactatat 135  Q
    ||||| | |||||||||| |||||    
T  28479089 cccctttcggctattagattatat 28479066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 26231792 - 26231668
Alignment:
Q  145 cttgtattctagattctttaaataggactaaattaggatttatt--gaaattagattttcttgatgttgatcactctaggattctcttttccttgtgatt 242  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||  ||| ||||||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  26231792 cttgtattcttgattctttaaataggaagaaattaggatatattttgaatttagattttgttgatgttgattactccagggttctcttttccttgtgatt 26231693  T
Q  243 tggtggatttctctgcactcttttt 267  Q
    |||||||||||| ||||||||||||    
T  26231692 tggtggatttctttgcactcttttt 26231668  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 28508302 - 28508201
Alignment:
Q  34 tggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgcccctattggctattagactat 133  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||    
T  28508302 tggaagatcttaagcaacaattgacatcctctgaagctgttttggagagtatcattcaacaagaggtagttttacatgcccctatcggctattagactat 28508203  T
Q  134 at 135  Q
    ||    
T  28508202 at 28508201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 28137144 - 28137261
Alignment:
Q  18 attttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgccccta 117  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| | ||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  28137144 attttaagtcaacatgtggaagatcttaagcatcaattgacatcctctaaagctgttttgaagaatataattcaacaagaggcggttttaagtgcaccta 28137243  T
Q  118 ttggctattagactatat 135  Q
    |||| |||||||||||||    
T  28137244 ttggttattagactatat 28137261  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 26231945 - 26231838
Alignment:
Q  28 aacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgcccctattggctatta 127  Q
    ||||| ||||||  |||||||| ||||||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  26231945 aacatgtggaagttcttaagcatcaattgacatcctctcaagctattttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26231846  T
Q  128 gactatat 135  Q
    ||||||||    
T  26231845 gactatat 26231838  T

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Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 26126378 - 26126275
Alignment:
Q  28 aacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgcccctattggctatta 127  Q
    ||||| ||||||  |||||||| |||||| |||||||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  26126378 aacatgtggaagttcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26126279  T
Q  128 gact 131  Q
    ||||    
T  26126278 gact 26126275  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 26176429 - 26176329
Alignment:
Q  28 aacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgcccctattggctatta 127  Q
    ||||| ||||||  |||||||| |||||| |||||||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  26176429 aacatgtggaagttcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26176330  T
Q  128 g 128  Q
    |    
T  26176329 g 26176329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 26126217 - 26126109
Alignment:
Q  154 tagattctttaaataggactaaattaggatttattgaaattagattttcttgatgttgatcactctaggattctcttttccttgtgatttggtggatttc 253  Q
    |||||||||||||||||| ||||||||||| | ||||| ||||||||| |||||||     |||||| |||| || |||| |||||||||| |||||| |    
T  26126217 tagattctttaaataggaataaattaggatatgttgaatttagattttgttgatgt-----actctatgattatcctttctttgtgatttgatggattgc 26126123  T
Q  254 tctgcactcttttt 267  Q
    ||||||||||||||    
T  26126122 tctgcactcttttt 26126109  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 26176277 - 26176163
Alignment:
Q  145 cttgtattctagattctttaaataggactaaattaggatttattgaaattagattttcttgatgttgatcactctaggattctcttttccttgtgatttg 244  Q
    |||||| | |||||||||||||||||| ||||||||||| | ||||| ||||||||| |||||||     |||||| ||||||| |||| || |||||||    
T  26176277 cttgtactttagattctttaaataggaataaattaggatatgttgaatttagattttgttgatgt-----actctatgattctcctttctttatgatttg 26176183  T
Q  245 gtggatttctctgcactctt 264  Q
     |||||| ||||||||||||    
T  26176182 atggattgctctgcactctt 26176163  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 8538422 - 8538345
Alignment:
Q  17 cattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaaca 94  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||   ||||||||| | ||||||| ||||||||||||    
T  8538422 cattttaaatcaacatgtggaagatcttaagcaacaattgacagtttctgaagctattttggagactatcattcaaca 8538345  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 28680568 - 28680491
Alignment:
Q  17 cattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaaca 94  Q
    |||||||| ||||||| ||||||| |||||||| || |||||||| ||||||||| | ||||||| ||||||||||||    
T  28680568 cattttaaatcaacatgtggaagatcttaagcatcatttgacatcttctgaagctgttttggagactatcattcaaca 28680491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 27357062 - 27357149
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagagg 99  Q
    |||| |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||  || | ||| |||||||||||||| ||||||    
T  27357062 atagacattttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagagg 27357149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 28152478 - 28152555
Alignment:
Q  17 cattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaaca 94  Q
    |||||| | ||||||| | ||||| |||||||| |||||||||||||||||||||   ||||||| ||||||||||||    
T  28152478 catttttaatcaacatcttgaagatcttaagcatcaattgacatcctctgaagctgatttggagactatcattcaaca 28152555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 27921033 - 27921108
Alignment:
Q  17 cattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaa 92  Q
    |||||||| ||||||| ||||||| |||||||| ||||||||||| ||||||  | | ||||||| ||||||||||    
T  27921033 cattttaaatcaacatgtggaagatcttaagcatcaattgacatcttctgaatatgttttggagactatcattcaa 27921108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 27458125 - 27458047
Alignment:
Q  21 ttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagagg 99  Q
    ||||||||| || ||||||| |||||||| |||||||||||||| ||  || | ||| ||||||| |||||| ||||||    
T  27458125 ttaagtcaaaatgtggaagatcttaagcatcaattgacatcctcggagactgttttgaagagtattattcaaaaagagg 27458047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 8692323 - 8692206
Alignment:
Q  18 attttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagtgccccta 117  Q
    ||||||||||||||| |||| || |||||||| |||||||||| |||  ||||| | ||| ||| ||| |||||||||||||  ||||||||||||| ||    
T  8692323 attttaagtcaacatgtggaggatcttaagcatcaattgacatgctccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgccctta 8692224  T
Q  118 ttggctattagactatat 135  Q
    ||||||||||||||||||    
T  8692223 ttggctattagactatat 8692206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 22400976 - 22401063
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagagg 99  Q
    |||| |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||  || | ||| |||||||||||||| ||||||    
T  22400976 atagacattttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagagg 22401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 22792680 - 22792767
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagagg 99  Q
    |||| |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||  || | ||| |||||||||||||| ||||||    
T  22792680 atagacattttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagagg 22792767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 22966153 - 22966240
Alignment:
Q  12 ataggcattttaagtcaacatttggaagaacttaagcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagagg 99  Q
    |||| |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||  || | ||| |||||||||||||| ||||||    
T  22966153 atagacattttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagagg 22966240  T

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