View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_6 (Length: 504)

Name: NF9656_low_6
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_6
NF9656_low_6
[»] chr8 (3 HSPs)
chr8 (18-223)||(42233507-42233713)
chr8 (260-331)||(17521882-17521953)
chr8 (260-323)||(29316252-29316314)
[»] chr5 (9 HSPs)
chr5 (404-490)||(509256-509342)
chr5 (404-490)||(4126784-4126870)
chr5 (258-335)||(4126937-4127014)
chr5 (266-333)||(4560049-4560116)
chr5 (258-335)||(4126298-4126374)
chr5 (221-299)||(509432-509503)
chr5 (223-258)||(19083960-19083995)
chr5 (258-335)||(4561317-4561393)
chr5 (222-258)||(30335803-30335839)
[»] chr3 (4 HSPs)
chr3 (404-490)||(27002227-27002313)
chr3 (269-335)||(27002385-27002451)
chr3 (263-335)||(27001744-27001816)
chr3 (224-264)||(27958884-27958924)
[»] chr7 (1 HSPs)
chr7 (257-333)||(3777840-3777916)
[»] chr1 (3 HSPs)
chr1 (439-490)||(44005766-44005817)
chr1 (262-335)||(44006207-44006280)
chr1 (258-290)||(44005710-44005742)
[»] chr2 (1 HSPs)
chr2 (224-258)||(16147669-16147703)
[»] chr4 (1 HSPs)
chr4 (221-258)||(22681978-22682015)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 42233713 - 42233507
Alignment:
Q  18 gggaggggaagggaaaactttagattagattacatgaagaataaaaggaaaatgaaagaaatattcgccctctaacttgaatgtaagagtctatttttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42233713 gggaggggaagggaaaactttagattagattacatgaagaataaaaggaaaatgaaagaaatattcgccctctaacttgaatgtaagagtctatttttct 42233614  T
Q  118 tcattgtacaaaatcaccacaaatgaagaaact-aaaataggtattggagagagattttgaaggattttttaggctcacataaaatcttcaaactcaatt 216  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||    
T  42233613 tcattgtacaaaatcaccacaaatgaagaaactaaaaaaaggtattggagagagattttggaggattttttaggctcacataaaatcttcaaatccaatt 42233514  T
Q  217 tatgtaa 223  Q
    |||||||    
T  42233513 tatgtaa 42233507  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 17521953 - 17521882
Alignment:
Q  260 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaa 331  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||| |||||||||| ||||| |||||||    
T  17521953 aggataagcagtaattaaagcacccactattataggtttctccaaattttattaatgagcaaattttgaaaa 17521882  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 29316314 - 29316252
Alignment:
Q  260 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaat 323  Q
    |||||||| |||||||||| ||||| || ||||||||||  | |||||||||||||||||||||    
T  29316314 aggataaagagtaattaatacacccgct-ttataggtttctctaaatcttattaatgaccaaat 29316252  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 404 - 490
Target Start/End: Complemental strand, 509342 - 509256
Alignment:
Q  404 ttgttacattccaattcatttaacttgctgcttatttgattttctcttgtccctgcacgtaagttcctaataatattgttgctgcca 490  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| ||||||||    
T  509342 ttgttacattccaattcatttaacttgctgcttatttaaatttctcttattcctgcacgtaagttcctaataatattggtgctgcca 509256  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 404 - 490
Target Start/End: Complemental strand, 4126870 - 4126784
Alignment:
Q  404 ttgttacattccaattcatttaacttgctgcttatttgattttctcttgtccctgcacgtaagttcctaataatattgttgctgcca 490  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||  |||||||||||||||||| |||||| |||||||||    
T  4126870 ttgttacattccaattcatttaacttgctgcttatttaaatttctcttgttgctgcacgtaagttcctaacaatatttttgctgcca 4126784  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 4127014 - 4126937
Alignment:
Q  258 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  4127014 acaggataagcagtaattaatgcacccactattataggttttttcaaatcttattaatgaccaaatcttaaaaattga 4126937  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 4560049 - 4560116
Alignment:
Q  266 aacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaatt 333  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  4560049 aacagtaattaatgcacccactattataggtttctctaaatcttattaatgaccaaatcttgaaaatt 4560116  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 4126298 - 4126374
Alignment:
Q  258 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    |||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||| |||||||| ||||||||    
T  4126298 acaggataaacagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatctt-aaaattga 4126374  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 509503 - 509432
Alignment:
Q  221 taagggtttttctaacccatgcaagattgcacaggatacaggataaacagtaattaatgcacccactattataggtttt 299  Q
    |||| ||||||||||||| |||||||||||| ||||||       | |||||||||||||||||||| |||||||||||    
T  509503 taagagtttttctaacccgtgcaagattgcaaaggata-------agcagtaattaatgcacccactgttataggtttt 509432  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 19083995 - 19083960
Alignment:
Q  223 agggtttttctaacccatgcaagattgcacaggata 258  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19083995 agggtttttctaacctatgcaagattgcacaggata 19083960  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 4561393 - 4561317
Alignment:
Q  258 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    |||||||||  ||| || ||| ||||||||||| |||||||  || |||||||||||||| |||||||| ||||||||    
T  4561393 acaggataagtagtgatcaatacacccactattgtaggtttcgccgaatcttattaatgatcaaatctt-aaaattga 4561317  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 30335803 - 30335839
Alignment:
Q  222 aagggtttttctaacccatgcaagattgcacaggata 258  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30335803 aagggtttttctaacctgtgcaagattgcacaggata 30335839  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 404 - 490
Target Start/End: Complemental strand, 27002313 - 27002227
Alignment:
Q  404 ttgttacattccaattcatttaacttgctgcttatttgattttctcttgtccctgcacgtaagttcctaataatattgttgctgcca 490  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  27002313 ttgttacattccaattcatttaacttgctgcgtatttaattttctcttgttcctgcacgtaagttcctgataatattgctgctgcca 27002227  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 27002451 - 27002385
Alignment:
Q  269 agtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27002451 agtaattaatgcacccactattataggtttttccaaattttattaatgaccaaatcttgaaaattga 27002385  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 27001744 - 27001816
Alignment:
Q  263 ataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    |||| |||||||||| |||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||    
T  27001744 ataagcagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatcttgaaaattga 27001816  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 27958884 - 27958924
Alignment:
Q  224 gggtttttctaacccatgcaagattgcacaggatacaggat 264  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  27958884 gggtttttctaacctgtgcaagattgcacaggataaaggat 27958924  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 3777916 - 3777840
Alignment:
Q  257 tacaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaatt 333  Q
    |||||||||| ||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||| ||||||    
T  3777916 tacaggataagcagtaattaatgcacccactattgtaggtttctccaaatcttaataatgaccaaatcttaaaaatt 3777840  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 44005766 - 44005817
Alignment:
Q  439 ttgattttctcttgtccctgcacgtaagttcctaataatattgttgctgcca 490  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44005766 ttgattttctcttgtccctgcacgtaagttcctaataatattgctgctgcca 44005817  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 44006280 - 44006207
Alignment:
Q  262 gataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 335  Q
    ||||| |||||||||| ||||||||||||||| ||||  |||||||||||| | || |||||||||||||||||    
T  44006280 gataagcagtaattaaagcacccactattataagtttctccaaatcttattcaggagcaaatcttgaaaattga 44006207  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 44005710 - 44005742
Alignment:
Q  258 acaggataaacagtaattaatgcacccactatt 290  Q
    |||||||||| ||||||||||||||||||||||    
T  44005710 acaggataaagagtaattaatgcacccactatt 44005742  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 16147669 - 16147703
Alignment:
Q  224 gggtttttctaacccatgcaagattgcacaggata 258  Q
    |||||||||||||| ||||||||||||||||||||    
T  16147669 gggtttttctaacctatgcaagattgcacaggata 16147703  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 22681978 - 22682015
Alignment:
Q  221 taagggtttttctaacccatgcaagattgcacaggata 258  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22681978 taagggtttttctaacctgtgcaagattgcacaggata 22682015  T

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