View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_61 (Length: 266)
Name: NF9656_low_61
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 4105542 - 4105736
Alignment:
| Q |
50 |
cctctaccctttacataattaccattctttttcttcaacttatgttagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaa |
149 |
Q |
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| T |
4105542 |
cctctaccctttacataattgccattctttttcttcaacttatattagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaa |
4105641 |
T |
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| Q |
150 |
caatccatggctatcaccttctggtgaattcgctttcggatttcggaataccacaacaaactttttcatgcttgcaatatggtacaacaccatac |
244 |
Q |
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| T |
4105642 |
caatccatggctatcaccttctggtgaattcgctttcggatttcggaataccacaacaaactttttcatgcttgcaatatggtacaacaacatac |
4105736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 4128737 - 4128872
Alignment:
| Q |
52 |
tctaccctttacataattaccattctttttcttcaacttatgttagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaaca |
151 |
Q |
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|||||| | ||||||||| |||||| |||||||||||| |||||| ||||||||||||| ||| |||||| | ||| || ||||| ||||| | |
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| T |
4128737 |
tctaccttatacataattttcattctatttcttcaacttttgttagtctttggaaacgttactcgaagttctacactatctaccac------aaacaaaa |
4128830 |
T |
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| Q |
152 |
atccatggctatcaccttctggtgaattcgctttcggatttc |
193 |
Q |
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| T |
4128831 |
attcatggctatcaccttctggtgaatttgctttcgggtttc |
4128872 |
T |
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