View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_64 (Length: 264)
Name: NF9656_low_64
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 7621670 - 7621443
Alignment:
| Q |
21 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggttagaccttcaaggagttcaagctaaaatgaaaaaattacacaaga |
120 |
Q |
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| T |
7621670 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggctagaccttcaaggagttcaagctaaaatgaagaaattacacaaga |
7621571 |
T |
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| Q |
121 |
agtttgatgcatttttaacaaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaa |
220 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621570 |
agtttgatgcatttttaacgaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaa |
7621471 |
T |
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| Q |
221 |
agaggaaacagatgttgatggaaacaaa |
248 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7621470 |
agaggaaacagatgttgatggaaacaaa |
7621443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 7662520 - 7662747
Alignment:
| Q |
21 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggttagaccttcaaggagttcaagctaaaatgaaaaaattacacaaga |
120 |
Q |
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| T |
7662520 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggctagaccttcaaggagttcaagctaaaatgaaaaaattacacaaga |
7662619 |
T |
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| Q |
121 |
agtttgatgcatttttaacaaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaa |
220 |
Q |
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| T |
7662620 |
agtttgatgcatttttaacaaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaa |
7662719 |
T |
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| Q |
221 |
agaggaaacagatgttgatggaaacaaa |
248 |
Q |
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| T |
7662720 |
agaagaaacggatgttgatggaaacaaa |
7662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 7682026 - 7682249
Alignment:
| Q |
21 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggttagaccttcaaggagttcaagctaaaatgaaaaaattacacaaga |
120 |
Q |
| |
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||||| |||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
7682026 |
atggttttaggtggagttttcaacattggtgattttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaaga |
7682125 |
T |
|
| Q |
121 |
agtttgatgcatttttaacaaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| ||| | || || |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7682126 |
ggtttgatgcatttttaacaaacattattgatgaacataaaacttctatttctaggagtgagaaacataaggatttgttgagtactttgttgtcacttaa |
7682225 |
T |
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| Q |
221 |
agaggaaacagatgttgatggaaa |
244 |
Q |
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|||||||||| ||| |||||||| |
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| T |
7682226 |
agaggaaacatatgaggatggaaa |
7682249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 7667635 - 7667810
Alignment:
| Q |
21 |
atggtgttagctggagttttcaatataagtgattttattccatcattggaatggttagaccttcaaggagttcaagctaaaatgaaaaaattacacaaga |
120 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7667635 |
atggtgttagctggagtttttaatataagtgattttattccttcattagaatggctagaccttcaagaagttcaagctaaaatgaaaaaattacacaaac |
7667734 |
T |
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| Q |
121 |
agtttgatgcatttttaacaaacattattgatgaacgtgaaaattcaaattttaagagtgagaaacataaggattt |
196 |
Q |
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| T |
7667735 |
aatttgatgcatttttaacaaacattattgaggaacatgaggcatctaattataagaatgaaaaacataaggattt |
7667810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 7667812 - 7667850
Alignment:
| Q |
210 |
ttgttacttaaagaggaaacagatgttgatggaaacaaa |
248 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| |
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| T |
7667812 |
ttgttacttaaagaggaaacggatgatgatggaaacaaa |
7667850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 45480051 - 45480182
Alignment:
| Q |
20 |
tatggtgttagctggagttttcaatataagtgattttattccatcattggaatggttagaccttcaaggagttcaagctaaaatgaaaaaattacacaag |
119 |
Q |
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|||||| || ||||| ||||||||||| |||||||| |||| | || || ||||| || |||||||| || |||| ||||||||||||||||||||| |
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| T |
45480051 |
tatggtattggctggtgttttcaatattggtgattttcttcctgctttcgagtggttggatcttcaaggtgtgcaaggtaaaatgaaaaaattacacaaa |
45480150 |
T |
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| Q |
120 |
aagtttgatgcatttttaacaaacattattga |
151 |
Q |
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| T |
45480151 |
agatttgatacatttttaacaagcattattga |
45480182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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