View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_65 (Length: 256)
Name: NF9656_low_65
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 32010128 - 32010253
Alignment:
| Q |
122 |
catcactagagttttaaaatattgatttaatccaatttttcacttataagttatatcaaacactaaatagaacacatctctttatcagaatttaaatttt |
221 |
Q |
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| T |
32010128 |
catcactagagttttaaaatattgatttaatccaatttttcacttataagttatatcaaacactaaatagaacacatctctttatcagaatttaaatttt |
32010227 |
T |
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| Q |
222 |
agttcatcagataataaaagtataat |
247 |
Q |
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| T |
32010228 |
agttcatcagataataaaagtataat |
32010253 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 32010057 - 32010092
Alignment:
| Q |
17 |
atttataatgtgagagtgatgcaatcacgtaccgaa |
52 |
Q |
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| T |
32010057 |
atttataatgtgagagtgatgcaatcacgtaccgaa |
32010092 |
T |
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