View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_68 (Length: 255)
Name: NF9656_low_68
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 55825222 - 55825443
Alignment:
| Q |
25 |
ataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaatt |
124 |
Q |
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| T |
55825222 |
ataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaatt |
55825321 |
T |
|
| Q |
125 |
ttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825322 |
ttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaag |
55825421 |
T |
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| Q |
225 |
ttctagctttttctctgcttct |
246 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
55825422 |
ttctagctttttctctgcttct |
55825443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 56149759 - 56149538
Alignment:
| Q |
25 |
ataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaatt |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149759 |
ataactgcctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaatt |
56149660 |
T |
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| Q |
125 |
ttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149659 |
ttgaaatcgagagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaag |
56149560 |
T |
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| Q |
225 |
ttctagctttttctctgcttct |
246 |
Q |
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|||||||||||||||||||||| |
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| T |
56149559 |
ttctagctttttctctgcttct |
56149538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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