View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_69 (Length: 255)
Name: NF9656_low_69
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 12086349 - 12086504
Alignment:
| Q |
18 |
agagtgttcaaaggattcaaaattgaaatctgagattgctgaattatccaatggtgaaagatctataacctccttagacatatttgtgaccaaatttttg |
117 |
Q |
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| T |
12086349 |
agagtgatcaaaggattcaaagttcaaatcaaagattgctgaattatccaatggtgaaagttctataacctctttagacatatctgtgaccaaatttttg |
12086448 |
T |
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| Q |
118 |
gttctggtttcatcactatctgataaagatt-caaaacattactactattagtttc |
172 |
Q |
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| T |
12086449 |
gttttggtttcatcactatctgataaagattccaaaaaactactactattagtttc |
12086504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 12086544 - 12086580
Alignment:
| Q |
212 |
tattttgtgataggtttttgtgtgttcacctttgctt |
248 |
Q |
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| T |
12086544 |
tatttagtgataggtttttgtgtgttcacctttgctt |
12086580 |
T |
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