View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9656_low_72 (Length: 253)
Name: NF9656_low_72
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_72 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 27651701 - 27651926
Alignment:
| Q |
6 |
aagcagagagtcaagacaattgattgaattagagttgcttgggaaagatgaaagaagataggagtaaggcaaaatcattgagtttcaaggaatacaagta |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27651701 |
aagcagaaagtcaagacaattgattgaattagggttgcttgggaaagatgaaagaagataggagtaaggcaaaatcattgagtttcaaggaatacaagta |
27651800 |
T |
|
| Q |
106 |
cacgccaaactgcagcgaaattaagaaaactgaattcagagcaagttatgtgtttcaagtaatgaagccaccccgctatcgttaacaatgaattagaagg |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
27651801 |
cacgcaaaactgcagcgaaattaagaaaaccgaattcagagcaagttatgtgtttcaagtaatgaagccaccccgctatcgttaacgatga---agaagg |
27651897 |
T |
|
| Q |
206 |
catctaccagcctaagactgacgaaactc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27651898 |
catctaccagcctaagactgacgaaactc |
27651926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 11682841 - 11682904
Alignment:
| Q |
100 |
caagtacacgccaaactgcagcgaaattaagaaaactgaattcagagcaagttatgtgtttcaa |
163 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||| ||||| | |||||| |||| |
|
|
| T |
11682841 |
caagtacacaccaaactacagcgaaattaagaaaaccgaattcaaagcaaatcatgtgtgtcaa |
11682904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 11718317 - 11718254
Alignment:
| Q |
100 |
caagtacacgccaaactgcagcgaaattaagaaaactgaattcagagcaagttatgtgtttcaa |
163 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||| ||||| | |||||| |||| |
|
|
| T |
11718317 |
caagtacacaccaaactacagcgaaattaagaaaaccgaattcaaagcaaatcatgtgtgtcaa |
11718254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University