View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_73 (Length: 249)
Name: NF9656_low_73
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 32014681 - 32014908
Alignment:
| Q |
6 |
gtaggacacaccaatcctacaattgtataagttggaattgtcgaggtataggtagccggaggacatttctaaatataatttgtggtgtgcagttttggca |
105 |
Q |
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| T |
32014681 |
gtaggacacaccaatcctacaattgtataagttggaattgtcgaggtataggtagccggaggacatttctaaatataatttgtggtgtgcagttttggca |
32014780 |
T |
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| Q |
106 |
gcatggactttggactcaatttacacaagctctgaataaaaaatacagagatcagggaaactatgtttaatattttgcaggttttgagtcaaagacatca |
205 |
Q |
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| T |
32014781 |
gcatggactttggactcaatttacacaagctctgaatacaaaatacagagatcagggaaactatgtttaatattttgctggttttgagtcaaagacatca |
32014880 |
T |
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| Q |
206 |
agcaatcttcttctgtactatggtccat |
233 |
Q |
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| T |
32014881 |
agcaatcttcttctgtactatggtccat |
32014908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32014297 - 32014363
Alignment:
| Q |
1 |
tcaaggtaggacacaccaatcctacaattgtataagttggaattgtcgaggtataggtagccggagga |
68 |
Q |
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| T |
32014297 |
tcaaggtaggacacaccaatcctacaattgtataagttggaattgtcg-ggtataggtagccggagga |
32014363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 32014493 - 32014555
Alignment:
| Q |
3 |
aaggtaggacacaccaatcctacaattgtataagttggaattgtcgaggtataggtagccgga |
65 |
Q |
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| T |
32014493 |
aaggtaggacacaccaatcctacaattgtataggttggagttgtcggggtataggtagccgga |
32014555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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