View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_75 (Length: 247)
Name: NF9656_low_75
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_75 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28636556 - 28636310
Alignment:
| Q |
1 |
attctctgataacaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtg |
100 |
Q |
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| T |
28636556 |
attctctgataacaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtg |
28636457 |
T |
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| Q |
101 |
gccagttcttcatccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
200 |
Q |
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| T |
28636456 |
gctaattcttcatccacagttagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
28636357 |
T |
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| Q |
201 |
attggacagcttttggatctggatttggtgttgggcatctacgtttt |
247 |
Q |
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| T |
28636356 |
attggacagcttttggatctggatttggtgttgggcacctacgtttt |
28636310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28657050 - 28656804
Alignment:
| Q |
1 |
attctctgataacaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtg |
100 |
Q |
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| T |
28657050 |
attctctgataacaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtg |
28656951 |
T |
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| Q |
101 |
gccagttcttcatccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
200 |
Q |
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| T |
28656950 |
gctagttcttcatccacagttagaagacccttatgttgcaaaatgttcttgtagtagttgttgtcaattatcaatggagtttttagatcattccttacat |
28656851 |
T |
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| Q |
201 |
attggacagcttttggatctggatttggtgttgggcatctacgtttt |
247 |
Q |
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| T |
28656850 |
attggacagcttttgcctttgggtttggttttggacatctacgtttt |
28656804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28606771 - 28606525
Alignment:
| Q |
1 |
attctctgataacaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtg |
100 |
Q |
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| T |
28606771 |
attctctgataacaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagta |
28606672 |
T |
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| Q |
101 |
gccagttcttcatccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
200 |
Q |
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| T |
28606671 |
gctagttcttcatccactgttagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
28606572 |
T |
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| Q |
201 |
attggacagcttttggatctggatttggtgttgggcatctacgtttt |
247 |
Q |
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| T |
28606571 |
attggacagcttttggatctggatttggtgttgggcacctacgtttt |
28606525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28664126 - 28663880
Alignment:
| Q |
1 |
attctctgataacaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtg |
100 |
Q |
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|||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||| ||||| |
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| T |
28664126 |
attctccgataacaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagta |
28664027 |
T |
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| Q |
101 |
gccagttcttcatccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacat |
200 |
Q |
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| T |
28664026 |
gctagttcttcatccactgttagaagacccttatgttgcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttctatcatttcttgcat |
28663927 |
T |
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| Q |
201 |
attggacagcttttggatctggatttggtgttgggcatctacgtttt |
247 |
Q |
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| T |
28663926 |
atagaacagcatttggatctggatttggtgttgggcatctaagtttt |
28663880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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