View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_77 (Length: 246)
Name: NF9656_low_77
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 30950079 - 30949862
Alignment:
| Q |
19 |
atatactcattactttgaagatgaggactaaaagtactagagacccaatggtaacgtcaagccccagggcatctaaccactaatctaagttgctaatctt |
118 |
Q |
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| T |
30950079 |
atatactcattactttgaagatgaggactaaaagtactagagacccaatggtaacgtcaagccccagggcatctaaccactaatctaagttgctaatctt |
30949980 |
T |
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| Q |
119 |
atgccatgaaaacatcctatagaaggggaataagacatcaagaaaatcctaatttgatcattactttgaagcatgctattttctcttttaaacatgctat |
218 |
Q |
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| T |
30949979 |
atgccatgaaaacatcctatagaaggggaataagacatcaagaaaatcctaagttgatcattactttgaagcatgctattttctcttttaaacatgctat |
30949880 |
T |
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| Q |
219 |
tgttgtcacgatctctgc |
236 |
Q |
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| T |
30949879 |
tgttgtcacgatctctgc |
30949862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 30944362 - 30944318
Alignment:
| Q |
145 |
ggaataagacatcaagaaaatcctaatttgatcattactttgaag |
189 |
Q |
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||||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
30944362 |
ggaataagacatcaagaaaatactaagtcgatcattactttgaag |
30944318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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