View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_79 (Length: 245)
Name: NF9656_low_79
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 42654559 - 42654772
Alignment:
| Q |
17 |
agttcatgataccaattactatgtagttcaaatattgtccaacaatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgagg |
116 |
Q |
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| T |
42654559 |
agttcatgataccaattactatgtagttcaaatattgtccaacaatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgagg |
42654658 |
T |
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| Q |
117 |
tgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654659 |
tgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtcc |
42654758 |
T |
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| Q |
217 |
aacatgtagcctat |
230 |
Q |
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|||||||||||||| |
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| T |
42654759 |
aacatgtagcctat |
42654772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 43053322 - 43053206
Alignment:
| Q |
114 |
aggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaag |
213 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43053322 |
aggtgtcaaaacttttctttctgatcaatagacaagtgattcttgaaggattggaatttgtgttatcaagacaacaaactaagaaatcaggcctatgaag |
43053223 |
T |
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| Q |
214 |
tccaacatgtagcctat |
230 |
Q |
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||||||||||||||||| |
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| T |
43053222 |
tccaacatgtagcctat |
43053206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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